View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7617_low_39 (Length: 245)
Name: NF7617_low_39
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_low_39 |
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Alignment Details
Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 20 - 236
Target Start/End: Original strand, 23922485 - 23922701
Alignment:
| Q |
20 |
ttgtgaacacataagcagaagattccttaagtctatcgttttgtttttgctatcatgtttcttaggacgaacctttccttcgttagatgaaggtggttgc |
119 |
Q |
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| T |
23922485 |
ttgtgaacacataagcagaagattccttaagtctatcgttttgtttttgctatcacgtttcttgggacgaacctttccttcgttagatgaaggtggttgc |
23922584 |
T |
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| Q |
120 |
tcattctgcaaaaattcacgttccacgttaagcaaagctttatcaaacatttctgataattcatcctcatcaacaacactaatagccgattgcttgttac |
219 |
Q |
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| T |
23922585 |
tcattctgcaaaaattcacgttccacgttaagcaaagctttatcaaacatttctgataattcatcctcatcaacaacactaatagccgattgcttgttac |
23922684 |
T |
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| Q |
220 |
tactcccttcttcttct |
236 |
Q |
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||||||||||||||||| |
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| T |
23922685 |
tactcccttcttcttct |
23922701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 20 - 236
Target Start/End: Complemental strand, 23904499 - 23904283
Alignment:
| Q |
20 |
ttgtgaacacataagcagaagattccttaagtctatcgttttgtttttgctatcatgtttcttaggacgaacctttccttcgttagatgaaggtggttgc |
119 |
Q |
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| T |
23904499 |
ttgtgaacacataagcagaagattccttaagtctatcgttttgtttttgctatcacgtttcttcggacgaacctttccttcattagatgaaggtggttgc |
23904400 |
T |
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| Q |
120 |
tcattctgcaaaaattcacgttccacgttaagcaaagctttatcaaacatttctgataattcatcctcatcaacaacactaatagccgattgcttgttac |
219 |
Q |
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| T |
23904399 |
tcattctgcaaaggttcacggtccacattaagcaaagctttatcaaacatttctgataattcatcctcatcaacaacactaatagccgattgcttgttac |
23904300 |
T |
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| Q |
220 |
tactcccttcttcttct |
236 |
Q |
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| T |
23904299 |
tactcccttcttcttct |
23904283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 142 - 225
Target Start/End: Original strand, 23912628 - 23912711
Alignment:
| Q |
142 |
ccacgttaagcaaagctttatcaaacatttctgataattcatcctcatcaacaacactaatagccgattgcttgttactactcc |
225 |
Q |
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|||| ||||||||| | ||||||||||| |||||||||||||||||||||||| |||||||||| ||||||||| |||| |||| |
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| T |
23912628 |
ccacattaagcaaaaccttatcaaacatctctgataattcatcctcatcaacagcactaatagctgattgcttgctacttctcc |
23912711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 60
Target Start/End: Original strand, 23912470 - 23912510
Alignment:
| Q |
20 |
ttgtgaacacataagcagaagattccttaagtctatcgttt |
60 |
Q |
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| T |
23912470 |
ttgtgaacacataagcagaagattccttaaatctattgttt |
23912510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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