View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7617_low_40 (Length: 244)

Name: NF7617_low_40
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7617_low_40
NF7617_low_40
[»] chr4 (10 HSPs)
chr4 (42-221)||(30264375-30264554)
chr4 (42-221)||(30287634-30287813)
chr4 (42-192)||(30048573-30048723)
chr4 (42-192)||(30062914-30063064)
chr4 (42-198)||(30032327-30032483)
chr4 (42-180)||(30228712-30228850)
chr4 (42-219)||(30271269-30271446)
chr4 (42-219)||(30280743-30280920)
chr4 (42-219)||(30304336-30304513)
chr4 (42-185)||(30220209-30220352)
[»] scaffold0024 (2 HSPs)
scaffold0024 (62-174)||(79567-79679)
scaffold0024 (65-171)||(72506-72612)
[»] chr7 (1 HSPs)
chr7 (56-123)||(2311381-2311448)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 42 - 221
Target Start/End: Original strand, 30264375 - 30264554
Alignment:
Q  42 catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30264375 catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct 30264474  T
Q  142 tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30264475 tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagt 30264554  T

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Target: chr4; HSP #2
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 42 - 221
Target Start/End: Complemental strand, 30287813 - 30287634
Alignment:
Q  42 catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30287813 catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct 30287714  T
Q  142 tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30287713 tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacatagt 30287634  T

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Target: chr4; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 42 - 192
Target Start/End: Original strand, 30048573 - 30048723
Alignment:
Q  42 catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct 141  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |    
T  30048573 catcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggt 30048672  T
Q  142 tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgt 192  Q
    ||||||||| ||||||||||| ||||||||||| ||||| |||| ||||||    
T  30048673 tgttggataattgataacatgaatttcccaaagtggtttatcttgtggtgt 30048723  T

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Target: chr4; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 42 - 192
Target Start/End: Original strand, 30062914 - 30063064
Alignment:
Q  42 catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct 141  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |    
T  30062914 catcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtccatgatgaagtttgaatattatggtgcaagcagcattggt 30063013  T
Q  142 tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgt 192  Q
    ||||||||| ||||||||||| ||||||||||| ||||| |||| ||||||    
T  30063014 tgttggataattgataacatgaatttcccaaagtggtttatcttgtggtgt 30063064  T

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Target: chr4; HSP #5
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 42 - 198
Target Start/End: Original strand, 30032327 - 30032483
Alignment:
Q  42 catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct 141  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||  ||||| |    
T  30032327 catcagctctttgaagacaagaaagaagagcacccatgagagagtaaccgtcaccaagtgcatgatgaagtttgaatattatggtgcaagcttcattggt 30032426  T
Q  142 tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttc 198  Q
    ||||||||| ||||||| ||| ||||||||||| ||||| |||| |||||| |||||    
T  30032427 tgttggataattgataatatgaatttcccaaagtggtttatcttgtggtgttctttc 30032483  T

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Target: chr4; HSP #6
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 42 - 180
Target Start/End: Original strand, 30228712 - 30228850
Alignment:
Q  42 catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct 141  Q
    |||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |    
T  30228712 catcagctctttgaagacaagaaagaagagcactcatgagagagtaaccatcaccaagtgcatgattaagtttgaatattatggtgcaagcagcattggt 30228811  T
Q  142 tgttggatacttgataacatgtatttcccaaaggggttt 180  Q
    ||||||||| ||||||| ||| ||||||||||| |||||    
T  30228812 tgttggataattgataatatgaatttcccaaagtggttt 30228850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 30271269 - 30271446
Alignment:
Q  42 catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct 141  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||      |||||| ||    
T  30271269 catcagctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcatttct 30271368  T
Q  142 tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacata 219  Q
    ||||||||| || || | ||||||||||||||| |||||||||| |||||| ||||| || |  ||||||||||||||    
T  30271369 tgttggatatttaattaaatgtatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacata 30271446  T

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Target: chr4; HSP #8
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 42 - 219
Target Start/End: Complemental strand, 30280920 - 30280743
Alignment:
Q  42 catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct 141  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||      |||||||||    
T  30280920 catcagctctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgct 30280821  T
Q  142 tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacata 219  Q
    ||||||||| || || | ||| ||||||||||| |||||||||| |||||| ||||| || |  ||||||||||||||    
T  30280820 tgttggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacata 30280743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 42 - 219
Target Start/End: Original strand, 30304336 - 30304513
Alignment:
Q  42 catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct 141  Q
    ||||| |||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||      |||||||||    
T  30304336 catcaactctttgtagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgct 30304435  T
Q  142 tgttggatacttgataacatgtatttcccaaaggggtttgtcttttggtgtcctttctattaatatctttgacacata 219  Q
    ||||||||| || || | ||| ||||||||||| |||||||||| |||||| ||||| || |  ||||||||||||||    
T  30304436 tgttggatatttaattaaatgcatttcccaaagtggtttgtcttgtggtgttctttccatcataatctttgacacata 30304513  T

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Target: chr4; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 42 - 185
Target Start/End: Complemental strand, 30220352 - 30220209
Alignment:
Q  42 catcagctctatgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgct 141  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |  ||      |||||||||    
T  30220352 catcagctctttgaagacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatggtgaagtttgaatatcaaagttcctttagcattgct 30220253  T
Q  142 tgttggatacttgataacatgtatttcccaaaggggtttgtctt 185  Q
    ||||||||| || || | ||| ||||||||||||||||| ||||    
T  30220252 tgttggatatttaatcaaatgaatttcccaaaggggtttatctt 30220209  T

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Target: scaffold0024 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 174
Target Start/End: Original strand, 79567 - 79679
Alignment:
Q  62 gaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacat 161  Q
    |||||||| |||||||| |||||||||||||| ||||||||||||||||||||||||| || |||   ||| |||||  |||||||||| || |||| ||    
T  79567 gaaagaagtgcacccattagagagtaaccatctccaagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgttggatatttaataatat 79666  T
Q  162 gtatttcccaaag 174  Q
    |||| ||||||||    
T  79667 gtatctcccaaag 79679  T

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Target: scaffold0024; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 72506 - 72612
Alignment:
Q  65 agaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattatggtgtaagcagcattgcttgttggatacttgataacatgta 164  Q
    |||||||| ||||| |||||||||||||| ||||||||||||||||||||||||| || |||   ||| |||||  |||||||||| || |||| ||| |    
T  72506 agaagagctcccattagagagtaaccatctccaagtgcatgatgaagtttgaatactaaggtaccagctgcattttttgttggatatttaataatatgaa 72605  T
Q  165 tttccca 171  Q
    |||||||    
T  72606 tttccca 72612  T

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Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 56 - 123
Target Start/End: Complemental strand, 2311448 - 2311381
Alignment:
Q  56 agacaagaaagaagagcacccatgagagagtaaccatcaccaagtgcatgatgaagtttgaatattat 123  Q
    |||||||||||||| |||||||| ||||| |||||||| ||||||||||| |||||||||||||||||    
T  2311448 agacaagaaagaagtgcacccattagagaataaccatctccaagtgcatggtgaagtttgaatattat 2311381  T

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