View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7617_low_5 (Length: 527)
Name: NF7617_low_5
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_low_5 |
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| [»] chr3 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 367; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 18 - 527
Target Start/End: Complemental strand, 31002554 - 31002058
Alignment:
| Q |
18 |
aactagagacaagcgttagcgactaatgcagagactcgttttaacgaccaatttaaataaattagttcctaatgca----ctgaggcatacttttcaaaa |
113 |
Q |
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| T |
31002554 |
aactagagacaagcgttagcgactaatgcagagacttgttttaacgaccgatttaaataaattagttcctgattcagtcactaaggcatacttttcaaaa |
31002455 |
T |
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| Q |
114 |
taaaacaaagaagccttttaaacatatatatgaatatcaaagcattacaaagcggattaatactttaaattcaaatactcataatacatgaaagaaaaag |
213 |
Q |
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| T |
31002454 |
taaaataaataagccttttaaacatatatatgaatatcaaagcattacaaagcggattaatactttaaattcaaa---------------aaagaaaaag |
31002370 |
T |
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| Q |
214 |
taaaacttatgtataatactattttattagtttgcatacaacatacacgagcacctccttaatcctaacatcactttttgtacattttagtgaagggttc |
313 |
Q |
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| T |
31002369 |
tgaaacttatgtataatactattttattagtttgcatacaacatacacaagcacctccttaatcctaacatcgctttttgtacattttagtgaagggttc |
31002270 |
T |
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| Q |
314 |
atgtgttcctatattagtctttaatgtgtttgtgactgttttgagattctatcagtgttttgggttgctactgttgttctactttacttttctgnnnnnn |
413 |
Q |
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| T |
31002269 |
atgtgttcc--tattagtctttaatgtgtttgtgactgttttgagattctatcagtgttttgggttgctactgttattctactttacttttctgtttttt |
31002172 |
T |
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| Q |
414 |
ncaatcactgatgtccctatatgcttgtaatctgaaaattgttatccctttttctctctttaggtcttatatatacatgaaagagatggttactggaaga |
513 |
Q |
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| T |
31002171 |
tcaatcactgatgtccctatatgcttgtaatctgaaaattattatccctttttctctctttaggtcttatatatacatgaaagagatggttactggaaga |
31002072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 18 - 297
Target Start/End: Complemental strand, 31004261 - 31003974
Alignment:
| Q |
18 |
aactagagacaagcgttagcgactaatgcagagactcgttttaacgaccaatttaaataaattagttcctaatgc----actgagg-catacttttcaaa |
112 |
Q |
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| T |
31004261 |
aactagagacaaacattagcgactaatatagagacttgttttaacgaccgatttaaatat-ttagttcctgattcggtcactaagggcatacattttaaa |
31004163 |
T |
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| Q |
113 |
ataaaacaaagaagccttttaaacatatatatgaatatcaaagcattacaaagcggattaatactttaaattcaaatactcataatacatgaaaga-aaa |
211 |
Q |
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| T |
31004162 |
aaaaacaaaagttgccgtttaaacatatatataaacatcaa-gcattacaaagtgaattaataattaaaattcaagtattcacattgcatgaaaaacaaa |
31004064 |
T |
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| Q |
212 |
agtaaaacttatgtataatactattttattagtttgcatacaacatacacgagcacctccttaatcc----taacatcactttttgtaca |
297 |
Q |
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| T |
31004063 |
agtaaaacttatgtacaatactattttattagtttgtataaaacatacacaagcacctccttaatcccaattaacatcgctttttgtaca |
31003974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 293 - 523
Target Start/End: Complemental strand, 31003928 - 31003685
Alignment:
| Q |
293 |
gtacattttagtgaagggttcatgtgttcctatattagtctttaatgtgtttgtgactgttttgagattctatcagtgtt-------------------t |
373 |
Q |
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| T |
31003928 |
gtacattttagtgaaggtttcatgtgttccttttcatgtcttttatgtgtttgtgactgttttgagattctatcagtgttggggtctagtgttctatttt |
31003829 |
T |
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| Q |
374 |
tgggttgctactgttgttctactttacttttctgnnnnnnncaatcactgatgtccctatatgcttgtaatctgaaaattgttatccctttttctctctt |
473 |
Q |
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| T |
31003828 |
tgggttgctactgttgttctactta-----tctggttttttcagtcactgatgtcc-tatatgcttgtaatctgaaaattattatgcctttttttctctt |
31003735 |
T |
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| Q |
474 |
taggtcttatatatacatgaaagagatggttactggaagattatgtagaa |
523 |
Q |
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| T |
31003734 |
tgggtcttgtatatacatgaaatagatagttactggatgacaatgtagaa |
31003685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 434 - 527
Target Start/End: Original strand, 23896430 - 23896523
Alignment:
| Q |
434 |
atgcttgtaatctgaaaattgttatccctttttctctctttaggtcttatatatacatgaaagagatggttactggaagattatgtagaattat |
527 |
Q |
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| T |
23896430 |
atgcttgtagtctgaaaataattatccctttttatctttttgggttttatatatacaggaaagagatggttactggaagatgatgcagaattat |
23896523 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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