View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7617_low_6 (Length: 505)
Name: NF7617_low_6
Description: NF7617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7617_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 461; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 18 - 498
Target Start/End: Complemental strand, 4244702 - 4244222
Alignment:
| Q |
18 |
atattgaaaccatgtcaatgcccttgttcacaaacttgaaccacattgagacacttctcaatgcaccaaacaccaacagcccaaacaatataagatggca |
117 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4244702 |
atatcgaaaccatgtcaatgcccttgttcacaaacttgaaccacattgagacacttctcaatgcaccaaacaccaacagcccaaacaatataagatggca |
4244603 |
T |
|
| Q |
118 |
caacgccttcatgaaaatctattgttctagggctttcatgttatattctaccagaaaaacaaaaatcacacctaccccatctttcaccgtggttgattta |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
4244602 |
caacgccttcatgaaaatctattgttctagggctttcatgtcatattctaccaaaaaaacaaaaatcactcctaccccatctttcaccgtggttgattta |
4244503 |
T |
|
| Q |
218 |
agttcacctcactcttttaccattgatcaagaaactctcatagatattgtcaaagagaaaagcattgatacacttcagaaacatggtggagttgaaggtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4244502 |
agttcacctcactcttttaccattgatcaagaaactctcatagatattgtcaaagagaaaagcattgatacacttcagaaacatggtggagttgaaggtg |
4244403 |
T |
|
| Q |
318 |
ttgcttcatcacttaaaaccaacgttgagtttggtatcaaaagtcatgatgatgattttcatgacatttcaattagacaacaagtgtttggttccaacac |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4244402 |
ttgcttcatcacttaaaaccaacgttgagtttggtatcagaagtcatgatgatgattttcatgacatttcaattagacaacaagtgtttggttccaacac |
4244303 |
T |
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| Q |
418 |
ttacaaaaaaccaccttctaaaagtttctttcattttgttgttgaagcttttaaggatgtaacaattcttattcttttggt |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4244302 |
ttacaaaaaaccaccttctaaaagtttctttcattttgttgttgaagcttttaaggatgtaacaattcttattcttttggt |
4244222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 21 - 498
Target Start/End: Complemental strand, 6187761 - 6187278
Alignment:
| Q |
21 |
ttgaaaccatgtcaatgcccttgttcacaaacttgaaccacattgagacacttctcaatgcaccaaa---caccaacagcccaaacaatataagatggca |
117 |
Q |
| |
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|||||||||||||||| | || ||||||||| ||||| |||||||||||||||| ||||||||||| |||||| ||| || ||| | ||||||||| |
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| T |
6187761 |
ttgaaaccatgtcaatcacatttttcacaaacatgaacgacattgagacacttcttaatgcaccaaaaaacaccaatagcacacacagcaaaagatggca |
6187662 |
T |
|
| Q |
118 |
caacgccttcatgaaaatctattgttctagggctttcatgttatattctaccagaaaaacaaaaatcacacctaccccatctttcaccgtggttgattta |
217 |
Q |
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||| || ||||||||||| ||||| |||||||||||||||| | ||| ||||| ||| |||||||||||||||| |||||||||||||||||||||||| |
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| T |
6187661 |
caatgctttcatgaaaatatattgctctagggctttcatgtcacattttaccaagaaaccaaaaatcacacctactccatctttcaccgtggttgattta |
6187562 |
T |
|
| Q |
218 |
agttcacctcactcttttaccattgatcaagaaactctcatagatattgtcaaagagaaaagcattgatacacttcagaaacatggtggagttgaaggtg |
317 |
Q |
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| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||| |
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| T |
6187561 |
aatttaccacactcttttaccattgatcaagaaactctcatagatattgtcaaagagaaaaacattgatacacttcaaaatcatggtggagttgaaggtg |
6187462 |
T |
|
| Q |
318 |
ttgcttcatcacttaaaaccaacgttgagtttggtatcaaaagtcatga---tgatgattttcatgacatttcaattagacaacaagtgtttggttccaa |
414 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||| |||| | |||||||| | || ||| ||||||| ||||||||||||||||||| |
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| T |
6187461 |
ttgcttcatcacttaaaaccaacattgagtttggtatcaaaagtgatgatactaatgattttgaagatattgcaattaggaaacaagtgtttggttccaa |
6187362 |
T |
|
| Q |
415 |
cacttacaaaaaaccaccttctaaaagtttctttcattttgttgttgaagcttttaaggatgtaacaattcttattcttttggt |
498 |
Q |
| |
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|||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||| |||||||| || |||||||| |
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| T |
6187361 |
cacttacaaaaaaccaccttctaagagtttcattcattttgttattgaagcttttaaggatgttacaattctaatccttttggt |
6187278 |
T |
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