View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7618_high_11 (Length: 419)

Name: NF7618_high_11
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7618_high_11
NF7618_high_11
[»] chr1 (3 HSPs)
chr1 (318-401)||(51116084-51116167)
chr1 (9-78)||(51116197-51116267)
chr1 (315-373)||(51106777-51106835)


Alignment Details
Target: chr1 (Bit Score: 84; Significance: 9e-40; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 318 - 401
Target Start/End: Complemental strand, 51116167 - 51116084
Alignment:
Q  318 atgtgaatttataagtaattatgattaaaatcgaacattttaatttatatgacatttgtttatttattgacactcttaattact 401  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51116167 atgtgaatttataagtaattatgattaaaatcgaacattttaatttatatgacatttgtttatttattgacactcttaattact 51116084  T

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Target: chr1; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 9 - 78
Target Start/End: Complemental strand, 51116267 - 51116197
Alignment:
Q  9 cgtgttggatgatggtaaacctataacagtgcattttcgttaaacttgg-ttaggttgcttactttcgcta 78  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  51116267 cgtggtggatgatggtaaacctataacagtgcattttcgttaaacttggtttaggttgcttactttcgcta 51116197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 315 - 373
Target Start/End: Complemental strand, 51106835 - 51106777
Alignment:
Q  315 tatatgtgaatttataagtaattatgattaaaatcgaacattttaatttatatgacatt 373  Q
    |||||||||||||| ||||||||||||||||| || |||||||||||| ||||| ||||    
T  51106835 tatatgtgaatttagaagtaattatgattaaagtcaaacattttaattgatatgtcatt 51106777  T

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