View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7618_high_12 (Length: 415)

Name: NF7618_high_12
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7618_high_12
NF7618_high_12
[»] chr7 (1 HSPs)
chr7 (16-415)||(262906-263309)


Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 16 - 415
Target Start/End: Complemental strand, 263309 - 262906
Alignment:
Q  16 atataattacgctgatcaaaacaaaccacatacaatgacttaaaatgaaaaacaaaacacattacctttcatagtgttgtgtttcattttgaatgcattg 115  Q
    ||||||||| ||| |||||||||||||| |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||    
T  263309 atataattatgctaatcaaaacaaaccatatacaacgacttaaaatgaaaaacaaaacacattacctttaatagtgttgtgtttcattctgaatgcattg 263210  T
Q  116 aatttttccataaatcttgagctgtttttcaacttcttcttcaacttttggtcgccatgaccaacaaaagnnnnnnn----cgatcacatcaccaccaac 211  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           |||||||||||||||||||    
T  263209 aatttttccataaatcttgagctgtttttcaacttcttcttcaacttttggtcgccatgaccaacaaaagaaaaaaaaaaacgatcacatcaccaccaac 263110  T
Q  212 aacttctttgatcaattgtttgatacaagtcaatatgagatccaatgctacccaacatatttttccggtcttccatcttttgatgactttatttcgcagt 311  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  263109 aacttctttaatcaattgtttgatacaagtcaatatgagatccaatgctacccaacatatttttccggtcttccatcttttgatgactttatttcgcagt 263010  T
Q  312 acaatgatgttatcattgttcatgtagttcaaaactacgattaaggacctttctggtcattcttaaatgaaatatttaagcgagtattaaagtatttatt 411  Q
    | |||||||||||||||||| || ||||||||||| |||||||||| ||||| |||||||||| |||||||||||||||| | ||||||||| ||| |||    
T  263009 aaaatgatgttatcattgttaatatagttcaaaaccacgattaaggccctttatggtcattctaaaatgaaatatttaagtgtgtattaaagaattaatt 262910  T
Q  412 cata 415  Q
    ||||    
T  262909 cata 262906  T

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