View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7618_high_16 (Length: 367)
Name: NF7618_high_16
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_high_16 |
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Alignment Details
Target: chr7 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 3 - 361
Target Start/End: Complemental strand, 42546875 - 42546517
Alignment:
| Q |
3 |
caatgaaatggcacaaaccaattggttagttaaggttccaaaatttgatatcgctgaaaatgacatctaattacacgtatatatgatcttcatactattt |
102 |
Q |
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| T |
42546875 |
caatgaaatggcacaaaccaattggttagttaaggttccaaaatttgatattgctgaaagtgacatctaattacacgtatatatgatgttcatactattt |
42546776 |
T |
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| Q |
103 |
gcaggcgtattaatcaattacattgcacctattaaaactttaatactacgtactcctgcattattagtattnnnnnnnnnnnnctagaaatggtatatac |
202 |
Q |
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| T |
42546775 |
gcaggcgtattaatcaattacattgcacctattaaaactttaatactacgtactcctgcattattagtattaaaaaataaaaactagaaatggtatatac |
42546676 |
T |
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| Q |
203 |
tacttctgagtataaattctacctatattcttatgactacttccataacgcgctcttcacctctaatcc----caatgtaaggaaagtcaaatgttagtg |
298 |
Q |
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| T |
42546675 |
tacttctgagtataaatt----ctatattcttatgactacttccataacgcgctcttcacctctaatcccaatcaatgtaaggaaagtcaaatgttagtg |
42546580 |
T |
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| Q |
299 |
atcattcaagtaattgaatggtttattgtttattgatgtaatgttccaatatattgaatcagc |
361 |
Q |
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| T |
42546579 |
atcattcaagtaattgaatggtttattgtttattgatgtaatgttccaatatattgaatcagc |
42546517 |
T |
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