View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7618_high_17 (Length: 366)
Name: NF7618_high_17
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_high_17 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 292
Target Start/End: Original strand, 25837431 - 25837708
Alignment:
| Q |
15 |
tatacattgtgtatattaatattatgtaaattgtgtataatacgtttgttattctaataattaacattgttcgcatcaaccagatgatcccagcccatgt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25837431 |
tatacattgtgtatattaatattatgtaaattgtgtataatacgtttgttattctaataattaacattgttcgcatcaaccagatgatcccagcccatgt |
25837530 |
T |
|
| Q |
115 |
tgtgcaaacatatctcgtgagaagactaaggcatatccaggtattgctacccagtggggcagtggaaaattggatgctaatttggaacggaaaaagaaag |
214 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25837531 |
tgtgcaaacatatctcgtgagaagaccaaggcatgtccaggtattgctacccagtggggcagtggaaaattggatgctaatttggaacggaaaaagaaag |
25837630 |
T |
|
| Q |
215 |
tcacaatgccatatcggatatggatggtataattttgcaaccacagaatcattttgcgtaggaagcaagattcaattt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
25837631 |
tcacaatgccatatcggatatggatggtataattttgcaaccacggaatcgttttgcgtaggaagcaagattcaattt |
25837708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 291 - 366
Target Start/End: Original strand, 25837758 - 25837833
Alignment:
| Q |
291 |
ttatccagccatctattctgttgttttaaacacttaattaattgttgtttaatcgagaatacttgtttcttcattc |
366 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25837758 |
ttatccagccatctattctgttgttttaaacacttaattaattgttgtttaatcgagaatacttgtttcttcattc |
25837833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University