View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7618_high_23 (Length: 254)

Name: NF7618_high_23
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7618_high_23
NF7618_high_23
[»] chr8 (4 HSPs)
chr8 (12-116)||(34108785-34108890)
chr8 (178-235)||(34108666-34108723)
chr8 (16-115)||(29608580-29608677)
chr8 (184-237)||(29608459-29608511)
[»] chr7 (1 HSPs)
chr7 (194-239)||(25032574-25032619)
[»] chr5 (5 HSPs)
chr5 (178-239)||(36410391-36410452)
chr5 (16-101)||(36409813-36409897)
chr5 (67-105)||(11857502-11857540)
chr5 (67-105)||(21178486-21178524)
chr5 (12-115)||(25815337-25815437)
[»] chr4 (1 HSPs)
chr4 (178-239)||(36690500-36690561)
[»] chr3 (2 HSPs)
chr3 (13-115)||(11500598-11500697)
chr3 (178-239)||(11500760-11500820)
[»] chr1 (1 HSPs)
chr1 (181-222)||(16904544-16904585)


Alignment Details
Target: chr8 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 34108890 - 34108785
Alignment:
Q  12 gaatatcaatttatgattcctttttgta-attttgtgaatcttttttctcctttaatgcatgcagtgttatttacacactctcataccaacgatttagtg 110  Q
    ||||||||||||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  34108890 gaatatcaatttatgattcctttttttttattttgtgaatcttttttctcctttaatgcatgcagtgttatttacacactctcgtaccaacgatttagtg 34108791  T
Q  111 ctcgta 116  Q
    ||||||    
T  34108790 ctcgta 34108785  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 178 - 235
Target Start/End: Complemental strand, 34108723 - 34108666
Alignment:
Q  178 ctattcaaaaatcttatttagtctcgttatactaaaacaagtctctcatctttcttat 235  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  34108723 ctattcaaaaatcttatttagtctcgttatactaaaacgagtctctcatctttcttat 34108666  T

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Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 115
Target Start/End: Complemental strand, 29608677 - 29608580
Alignment:
Q  16 atcaatttatgattcctttttgtaattttgtgaatcttttttctcctttaatgcatgcagtgttatttacacactctcataccaacgatttagtgctcgt 115  Q
    |||||||||||||| ||  ||| ||||| |||| | ||||||   ||||| ||||| ||||||||||||| |||||||||||||| |||| |||||||||    
T  29608677 atcaatttatgatttctcattgcaatttcgtgatttttttttt--ctttattgcattcagtgttatttacgcactctcataccaatgattcagtgctcgt 29608580  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 184 - 237
Target Start/End: Complemental strand, 29608511 - 29608459
Alignment:
Q  184 aaaaatcttatttagtctcgttatactaaaacaagtctctcatctttcttatat 237  Q
    ||||||||| ||| ||||||| |||||||| | |||||||||||||||||||||    
T  29608511 aaaaatcttcttt-gtctcgtcatactaaagcgagtctctcatctttcttatat 29608459  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 194 - 239
Target Start/End: Complemental strand, 25032619 - 25032574
Alignment:
Q  194 tttagtctcgttatactaaaacaagtctctcatctttcttatatct 239  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||    
T  25032619 tttagtctcgtcatactaaagcaagtctctcatctttcttatatct 25032574  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 36410391 - 36410452
Alignment:
Q  178 ctattcaaaaatcttatttagtctcgttatactaaaacaagtctctcatctttcttatatct 239  Q
    |||||||||||| || |||||||| || |||||||||| ||||||||||||| |||||||||    
T  36410391 ctattcaaaaattttctttagtcttgtcatactaaaacgagtctctcatcttccttatatct 36410452  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 36409813 - 36409897
Alignment:
Q  16 atcaatttatgattcctttttgtaattttgtgaatcttttttctcctttaatgcatgcagtgttatttacacactctcataccaac 101  Q
    |||||||||||||||||| ||| ||||| |||| | |||||| |  || | | ||||||||||||||||||||||| |||||||||    
T  36409813 atcaatttatgattccttgttgcaatttcgtgagttttttttataatt-attacatgcagtgttatttacacactcacataccaac 36409897  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 11857502 - 11857540
Alignment:
Q  67 tgcatgcagtgttatttacacactctcataccaacgatt 105  Q
    |||||| |||||||||||| |||||||||||||||||||    
T  11857502 tgcatgtagtgttatttacgcactctcataccaacgatt 11857540  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 105
Target Start/End: Original strand, 21178486 - 21178524
Alignment:
Q  67 tgcatgcagtgttatttacacactctcataccaacgatt 105  Q
    ||||||||||||||||||| |||||||||||||| ||||    
T  21178486 tgcatgcagtgttatttacgcactctcataccaatgatt 21178524  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 25815337 - 25815437
Alignment:
Q  12 gaatatcaatttatgattcctttttgtaattttgtgaatcttttttctcctttaatgcatgcagtgttatttacacactctcataccaacgatttagtgc 111  Q
    ||||||| ||||||||||  || ||| |||||||||||| ||||||  ||| |  |||||| || ||||||||  |||||||||||||| |||| |||||    
T  25815337 gaatatccatttatgattt-ttgttgcaattttgtgaatatttttttacctat--tgcatgtagcgttatttatgcactctcataccaatgattcagtgc 25815433  T
Q  112 tcgt 115  Q
    ||||    
T  25815434 tcgt 25815437  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 36690500 - 36690561
Alignment:
Q  178 ctattcaaaaatcttatttagtctcgttatactaaaacaagtctctcatctttcttatatct 239  Q
    |||||||||| ||||||||||| |||| |||||||| | |||||| ||||||||||||||||    
T  36690500 ctattcaaaagtcttatttagtttcgtcatactaaagcgagtctcacatctttcttatatct 36690561  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 115
Target Start/End: Original strand, 11500598 - 11500697
Alignment:
Q  13 aatatcaatttatgattcctttttgtaattttgtgaatcttttttctcctttaatgcatgcagtgttatttacacactctcataccaacgatttagtgct 112  Q
    ||||||||||||  ||||||| ||| ||||| |||||| ||||||   |||||  |||| ||||||||| ||| ||||||| ||||||| ||| ||||||    
T  11500598 aatatcaatttacaattccttgttgcaatttggtgaatttttttt---ctttatagcatacagtgttatatacgcactctcgtaccaacaattcagtgct 11500694  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 11500760 - 11500820
Alignment:
Q  178 ctattcaaaaatcttatttagtctcgttatactaaaacaagtctctcatctttcttatatct 239  Q
    ||||||||||||||| ||||||||||| ||||| |||| || |||||||||||  |||||||    
T  11500760 ctattcaaaaatcttctttagtctcgtcatact-aaacgagcctctcatcttttgtatatct 11500820  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 16904585 - 16904544
Alignment:
Q  181 ttcaaaaatcttatttagtctcgttatactaaaacaagtctc 222  Q
    |||||||||||| ||||||||||| ||||| |||||||||||    
T  16904585 ttcaaaaatcttctttagtctcgtcatactcaaacaagtctc 16904544  T

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