View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7618_high_27 (Length: 240)
Name: NF7618_high_27
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_high_27 |
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| [»] scaffold0191 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: scaffold0191 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 29596 - 29373
Alignment:
| Q |
17 |
aggtaatgggaataatttaatcatgaaatttgatgatgttgcgaatgaaagtgattatggctgtaaaagtagcaacactcttgaagttgttgacttgaca |
116 |
Q |
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| T |
29596 |
aggtaatgggaataatttaatcatgaaatttgatgatgttgcgaatgaaagtgattatggctgtaaaagtagcaacactcttgaagttgttgacttgaca |
29497 |
T |
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| Q |
117 |
agaaaaagttcttcattgggtacgacattttttgatgtttccaatactaccaagaaaactcctacatttaataaacaacctgctattgggaaaaggagac |
216 |
Q |
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| T |
29496 |
agaaaaagttcttcattgggtacgacattttttgatgtttccagtactaccaagacaactcctacatttaataaacaacctgctattgggaaaaggagac |
29397 |
T |
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| Q |
217 |
taggattaactgcaaatgtttctt |
240 |
Q |
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| T |
29396 |
taggattaactgcaaatgtttctt |
29373 |
T |
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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 37570553 - 37570626
Alignment:
| Q |
17 |
aggtaatgggaataatttaatcatgaaatttgatgatgttgcgaatgaaagtgattatggctgtaaaagtagca |
90 |
Q |
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| T |
37570553 |
aggtaatgggaataacttaatcgtgaagttcgatgatgttgtgaatgaaagtgactgtggctgtaaaagtagca |
37570626 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 202 - 240
Target Start/End: Original strand, 10432889 - 10432927
Alignment:
| Q |
202 |
ttgggaaaaggagactaggattaactgcaaatgtttctt |
240 |
Q |
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| T |
10432889 |
ttgggaaaaggagactaggattaactgcaaatgtttctt |
10432927 |
T |
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