View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7618_high_28 (Length: 238)

Name: NF7618_high_28
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7618_high_28
NF7618_high_28
[»] chr8 (6 HSPs)
chr8 (1-223)||(36930868-36931090)
chr8 (56-101)||(31427268-31427313)
chr8 (55-125)||(69082-69152)
chr8 (56-122)||(9089250-9089316)
chr8 (63-124)||(35211290-35211351)
chr8 (93-125)||(14067309-14067341)
[»] chr6 (1 HSPs)
chr6 (23-104)||(28991342-28991421)
[»] chr1 (3 HSPs)
chr1 (57-131)||(26092725-26092799)
chr1 (62-156)||(22332560-22332654)
chr1 (64-125)||(45414008-45414069)
[»] chr5 (3 HSPs)
chr5 (67-131)||(42069786-42069849)
chr5 (115-158)||(8955347-8955390)
chr5 (61-160)||(11607322-11607421)
[»] chr3 (2 HSPs)
chr3 (93-131)||(35747328-35747366)
chr3 (93-125)||(29384306-29384338)
[»] chr7 (5 HSPs)
chr7 (56-125)||(16703809-16703878)
chr7 (56-125)||(17678045-17678114)
chr7 (67-123)||(40364626-40364682)
chr7 (68-164)||(47140207-47140303)
chr7 (25-98)||(34777058-34777130)
[»] chr4 (3 HSPs)
chr4 (60-117)||(30990627-30990684)
chr4 (67-107)||(19487089-19487129)
chr4 (63-107)||(40025990-40026034)
[»] chr2 (2 HSPs)
chr2 (56-99)||(32957262-32957305)
chr2 (88-140)||(41332692-41332744)
[»] scaffold0011 (1 HSPs)
scaffold0011 (71-119)||(183731-183779)


Alignment Details
Target: chr8 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 36930868 - 36931090
Alignment:
Q  1 tgatacttttattaaattactccatccaatctcaattataaagaaaaaataacaattttaaaatttattgaataactaatatatttagtttgtaatatag 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36930868 tgatacttttactaaattactccatccaatctcaattataaagaaaaaataacaattttaaaatttattgaataactaatatatttagtttgtaatatag 36930967  T
Q  101 atcaaatgcatcaattattcaataattttaagaagtaaaaatttgtttataattgagaccggagggattatcttttattttggatttgtgtaatcaacac 200  Q
    ||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  36930968 atcaaatgcatcagttattcaataattttaaaaagtaaaaagttgtttataattgagaccagagggattatcttttattttggatttgtgtaatcaacac 36931067  T
Q  201 tatcatgtatagtggaatatatt 223  Q
    |||||||||||||||||||||||    
T  36931068 tatcatgtatagtggaatatatt 36931090  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 31427313 - 31427268
Alignment:
Q  56 ttttaaaatttattgaataactaatatatttagtttgtaatataga 101  Q
    |||| |||||||||||||||||||| |||||| |||||||||||||    
T  31427313 tttttaaatttattgaataactaatctatttaatttgtaatataga 31427268  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 69152 - 69082
Alignment:
Q  55 attttaaaatttattgaataactaatatatttagtttgtaatatagatcaaatgcatcaattattcaataa 125  Q
    |||||||  |||||| ||||| |||||||||| || | ||||||| ||||||| ||||| |||||||||||    
T  69152 attttaaggtttatttaataaataatatattttgtctataatataaatcaaatacatcatttattcaataa 69082  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 122
Target Start/End: Complemental strand, 9089316 - 9089250
Alignment:
Q  56 ttttaaaatttattgaataactaatatatttagtttgtaatatagatcaaatgcatcaattattcaa 122  Q
    |||||||||||||| ||||| | ||||||||  | | ||||||| ||||||| ||||||||||||||    
T  9089316 ttttaaaatttattaaataaatgatatatttgatctctaatataaatcaaatacatcaattattcaa 9089250  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 63 - 124
Target Start/End: Original strand, 35211290 - 35211351
Alignment:
Q  63 atttattgaataactaatatatttagtttgtaatatagatcaaatgcatcaattattcaata 124  Q
    ||||||||||||| ||||||||||||||| ||||||| || | || ||  ||||||||||||    
T  35211290 atttattgaataaataatatatttagtttataatataaattagatacaataattattcaata 35211351  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 14067309 - 14067341
Alignment:
Q  93 taatatagatcaaatgcatcaattattcaataa 125  Q
    |||||||||||| ||||||||||||||||||||    
T  14067309 taatatagatcacatgcatcaattattcaataa 14067341  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 104
Target Start/End: Complemental strand, 28991421 - 28991342
Alignment:
Q  23 catccaatctcaattataaagaaaaaataacaattttaaaatttattgaataactaatatatttagtttgtaatatagatca 104  Q
    ||||| |||||||||| ||| |||||||||  ||||| ||||||||||||||| |||| ||| |||||||||||||| ||||    
T  28991421 catccgatctcaattaaaaacaaaaaataa--atttttaaatttattgaataattaatgtatctagtttgtaatataaatca 28991342  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 26092725 - 26092799
Alignment:
Q  57 tttaaaatttattgaataactaatatatttagtttgtaatatagatcaaatgcatcaattattcaataattttaa 131  Q
    |||| |||||||| ||||| | |||||||| || ||||||||| ||||||| ||| |||||||||||||||||||    
T  26092725 tttataatttattaaataattgatatatttcgtatgtaatataaatcaaatacattaattattcaataattttaa 26092799  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 62 - 156
Target Start/End: Complemental strand, 22332654 - 22332560
Alignment:
Q  62 aatttattgaataactaatatatttagtttgtaatatagatcaaatgcatcaattattcaataattttaagaagtaaaaatttgtttataattga 156  Q
    |||||||||||||  |||| ||||| || ||||||||||| | ||| |||||| |||| ||||| ||||| |||| |||  ||||||||||||||    
T  22332654 aatttattgaatagttaatgtatttggtgtgtaatatagacctaatacatcaactattaaataagtttaaaaagtgaaatgttgtttataattga 22332560  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 45414008 - 45414069
Alignment:
Q  64 tttattgaataactaatatatttagtttgtaatatagatcaaatgcatcaattattcaataa 125  Q
    |||||| ||||| |||||||||| |||| |||| || ||||||| ||| |||||||||||||    
T  45414008 tttatttaataattaatatattttgtttataatgtaaatcaaatacattaattattcaataa 45414069  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 67 - 131
Target Start/End: Complemental strand, 42069849 - 42069786
Alignment:
Q  67 attgaataactaatatatttagtttgtaatatagatcaaatgcatcaattattcaataattttaa 131  Q
    |||||||||||| ||||| |||||| || |||||||||||| ||||||||||||||||| |||||    
T  42069849 attgaataactagtatatctagtttata-tatagatcaaatacatcaattattcaataaatttaa 42069786  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 115 - 158
Target Start/End: Complemental strand, 8955390 - 8955347
Alignment:
Q  115 ttattcaataattttaagaagtaaaaatttgtttataattgaga 158  Q
    ||||||||||| ||||| ||||||||| ||||||||||||||||    
T  8955390 ttattcaataaatttaaaaagtaaaaagttgtttataattgaga 8955347  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 160
Target Start/End: Original strand, 11607322 - 11607421
Alignment:
Q  61 aaatttattgaataactaatatatttagtttgtaatatagatcaaatgcatcaattattcaataattttaagaagtaaaaatttgtttataattgagacc 160  Q
    ||||||||| |||||||||| ||||| ||||||| |||| | |||||  || ||||||| ||||| | ||| || ||||  |||||||||||||| ||||    
T  11607322 aaatttatttaataactaatgtatttggtttgtattataaaccaaatatattaattattgaataaatctaacaaataaatttttgtttataattgtgacc 11607421  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 93 - 131
Target Start/End: Complemental strand, 35747366 - 35747328
Alignment:
Q  93 taatatagatcaaatgcatcaattattcaataattttaa 131  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  35747366 taatatagatcaaatgcatcaattattcaataaatttaa 35747328  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 125
Target Start/End: Original strand, 29384306 - 29384338
Alignment:
Q  93 taatatagatcaaatgcatcaattattcaataa 125  Q
    ||||||||||||||| |||||||||||||||||    
T  29384306 taatatagatcaaatacatcaattattcaataa 29384338  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 16703878 - 16703809
Alignment:
Q  56 ttttaaaatttattgaataactaatatatttagtttgtaatatagatcaaatgcatcaattattcaataa 125  Q
    ||||||| || ||| ||||| |||||||||| |||| ||| |||||||||||| |||| |||||||||||    
T  16703878 ttttaaagttaatttaataaataatatattttgtttataacatagatcaaatgtatcatttattcaataa 16703809  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 125
Target Start/End: Complemental strand, 17678114 - 17678045
Alignment:
Q  56 ttttaaaatttattgaataactaatatatttagtttgtaatatagatcaaatgcatcaattattcaataa 125  Q
    ||||||| || ||| ||||| |||||||||| |||| ||| |||||||||||| |||| |||||||||||    
T  17678114 ttttaaagttaatttaataaataatatattttgtttataacatagatcaaatgtatcatttattcaataa 17678045  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 123
Target Start/End: Original strand, 40364626 - 40364682
Alignment:
Q  67 attgaataactaatatatttagtttgtaatatagatcaaatgcatcaattattcaat 123  Q
    |||||| |||| |||||||| |||| || |||||||||||| |||||||||||||||    
T  40364626 attgaaaaactgatatatttggtttatattatagatcaaatacatcaattattcaat 40364682  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 47140303 - 47140207
Alignment:
Q  68 ttgaataactaatatatttagtttgtaatatagatcaaatgcatcaattattcaataattttaagaagtaaaaatttgtttataattgagaccggag 164  Q
    |||||||| | || |||||| ||| |||||||| ||| |||||||||||||||||||| | | | || |||| |||| |||||||| | ||||||||    
T  47140303 ttgaataattgatgtatttaatttataatatagttcagatgcatcaattattcaataaatctgaaaaataaatatttatttataatagtgaccggag 47140207  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 98
Target Start/End: Complemental strand, 34777130 - 34777058
Alignment:
Q  25 tccaatctcaattataaagaaaaaataacaattttaaaatttattgaataactaatatatttagtttgtaatat 98  Q
    |||||| ||||||||||| |||||| |  | |||| ||||||||||||||||||||  || |||||||||||||    
T  34777130 tccaatttcaattataaacaaaaaa-attattttttaaatttattgaataactaatgaatatagtttgtaatat 34777058  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 60 - 117
Target Start/End: Original strand, 30990627 - 30990684
Alignment:
Q  60 aaaatttattgaataactaatatatttagtttgtaatatagatcaaatgcatcaatta 117  Q
    |||||| |||||||||||||| ||| ||||||||||||||||  |||| |||||||||    
T  30990627 aaaattcattgaataactaatgtatctagtttgtaatatagactaaatacatcaatta 30990684  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Original strand, 19487089 - 19487129
Alignment:
Q  67 attgaataactaatatatttagtttgtaatatagatcaaat 107  Q
    |||||||||||||||||||| || |||||||||||| ||||    
T  19487089 attgaataactaatatatttggtgtgtaatatagattaaat 19487129  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 40025990 - 40026034
Alignment:
Q  63 atttattgaataactaatatatttagtttgtaatatagatcaaat 107  Q
    |||| ||||||||||||||||||  |||||||||||| |||||||    
T  40025990 attttttgaataactaatatattcggtttgtaatataaatcaaat 40026034  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 99
Target Start/End: Original strand, 32957262 - 32957305
Alignment:
Q  56 ttttaaaatttattgaataactaatatatttagtttgtaatata 99  Q
    |||||||||||||||||||||| ||||||||||| | |||||||    
T  32957262 ttttaaaatttattgaataactgatatatttagtctataatata 32957305  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 41332692 - 41332744
Alignment:
Q  88 gtttgtaatatagatcaaatgcatcaattattcaataattttaagaagtaaaa 140  Q
    ||||||||||||||  |||| ||||||||||||||||| | ||| ||||||||    
T  41332692 gtttgtaatatagacaaaatacatcaattattcaataaatgtaaaaagtaaaa 41332744  T

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Target: scaffold0011 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 183779 - 183731
Alignment:
Q  71 aataactaatatatttagtttgtaatatagatcaaatgcatcaattatt 119  Q
    ||||||||||||||||||||| || || |||||| || |||||||||||    
T  183779 aataactaatatatttagtttatattaaagatcagatacatcaattatt 183731  T

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