View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7618_high_3 (Length: 692)

Name: NF7618_high_3
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7618_high_3
NF7618_high_3
[»] chr2 (1 HSPs)
chr2 (33-681)||(26549870-26550518)


Alignment Details
Target: chr2 (Bit Score: 637; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 637; E-Value: 0
Query Start/End: Original strand, 33 - 681
Target Start/End: Complemental strand, 26550518 - 26549870
Alignment:
Q  33 agatatggtttgaaaaagtgtttataggtggggagacatccctcattgtatagatcgattttgtaggttatactgacttggtgtctcatttgtgatatta 132  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  26550518 agatatggtttgaaaaagtgtttataggtggggagacatccctcatcgtatagatcgattttgtaggttatactgacttggtgtctcatttgtgatattt 26550419  T
Q  133 ttctgcttaggttctgattgcagctggagtttcaatggcaatcgggcaactttctaagccatttacttctgtgtttctgtatggcaaagagtttgatatc 232  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26550418 ttctgcttaggttctgattgcagctggagtttcaatggcaatcgggcaactttctaagccatttacttctgtgtttctgtatggcaaagagtttgatatc 26550319  T
Q  233 aaggctcttattcaagctggagggttcccatcatcacactcttctgtatgaacttgaaacccttaaccagtaaatcctactttcatttcatctattccac 332  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26550318 aaggctcttattcaagctggagggtttccatcatcacactcttctgtatgaacttgaaacccttaaccagtaaatcctactttcatttcatctattccac 26550219  T
Q  333 ttgactagtgttgtttcacttttattctcacatagttgtttaaattttcttttggataggcaacagtggcttgtgcaacattacttggccttgagaggta 432  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26550218 ttgactagtgttgtttcacttttattctcacatagttgtttaaattttcttttggataggcaacagtggcttgtgcaacattacttggccttgagaggta 26550119  T
Q  433 agataattcagttatgctgacttggtgtctagttcatggcatttttctcttcactcttctgaaaattgcaattttcttaagaataatgtttctgtattta 532  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26550118 agataattcagttatgctgacttggtgtctagttcatggcatttttctcttcactcttctgaaaattgcaattttcttaagaataatgtttctgtattta 26550019  T
Q  533 tttttaattgtttattatccaaatgcagaggcctctcagatcccatttttggtcttgcagttgtgtatgctggtctgattatgtatgatgctcaggtgtg 632  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26550018 tttttaattgtttattatccaaatgcagaggcctctcagatcccatttttggtcttgcagttgtgtatgctggtctgattatgtatgatgctcaggtgtg 26549919  T
Q  633 atcttcttctcagatcccattttttgcgttatttacttcatgtattcat 681  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  26549918 atcttcttctcagatcccattttttgcgttatttacttcatgtattcat 26549870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University