View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7618_high_5 (Length: 559)
Name: NF7618_high_5
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 73; Significance: 4e-33; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 215 - 304
Target Start/End: Complemental strand, 47829527 - 47829442
Alignment:
| Q |
215 |
tctctgtactaaattctccattattcaagttcagttcctttgaatatttatttatttatactatcattacaacctagagatgcagttttt |
304 |
Q |
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| T |
47829527 |
tctctgtactaaattctccattattcaagttcagttcctttgaatatttat----ttatactatcattacaacctagagatgcagttttt |
47829442 |
T |
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Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 29729909 - 29729954
Alignment:
| Q |
139 |
tgtaatgaacctagataagaaactgccacgtcacacatcttaggtg |
184 |
Q |
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| T |
29729909 |
tgtaatgaacctggataagaaactgccacgtcagacatcttaggtg |
29729954 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 29730107 - 29730152
Alignment:
| Q |
218 |
ctgtactaaattctccattattcaagttcagttcctttgaatattt |
263 |
Q |
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| T |
29730107 |
ctgtactaaattccccattattcaagtttagttcctttgaatattt |
29730152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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