View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7618_low_10 (Length: 485)
Name: NF7618_low_10
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 155; Significance: 4e-82; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 167 - 431
Target Start/End: Original strand, 21526475 - 21526733
Alignment:
| Q |
167 |
ctccattgttgttaattataggaaaagtaggtaggtctattttaagtaagttgttagtaatttatttagtaaagtattcaacgatttgaaatattgtagt |
266 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| |
|
|
| T |
21526475 |
ctccattgttgttaattataggaaaagtaggtaggtctattttaagtaagttgttagtaatttatttagtaaagtattgaacaatttgaaatagtgtagt |
21526574 |
T |
|
| Q |
267 |
ctactctag-----agtctagtctagtccataaagagtttgatagattcacactactactacacaaacttgtgtcgtggttggttgttgatgttatccgc |
361 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
|
|
| T |
21526575 |
ctactctagagtctagtctagtctagtccataaagagtttgatagattcac---actactacacaaac---------------ttgttgatgttatccgc |
21526656 |
T |
|
| Q |
362 |
gttcacgcgccatggagtcag-------tcagcagcagtaacaaaccgcaatagttggtactattaatagaagaaag |
431 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21526657 |
gttcacgcgccatggagtcagtcagcactcagcagcagtaacaaaccgcaatagttggtactattaatagaagaaag |
21526733 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 26 - 115
Target Start/End: Original strand, 21526390 - 21526479
Alignment:
| Q |
26 |
tgattgagcaatttggaagatctattgatgaatcaccaaatgtttccttggtgtctaaggtaaatgatagttgaaagtcttttgtctcca |
115 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
21526390 |
tgattgagcaatttggaagacctattgatgaatcaccaaatgtttccttggtgtctaaggtaaatgatagttgaaagtcttatgtctcca |
21526479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 428 - 463
Target Start/End: Original strand, 21526771 - 21526806
Alignment:
| Q |
428 |
aaagtcctctcttgactttcttacatctatttgccg |
463 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| |
|
|
| T |
21526771 |
aaagtcctctcttgactttcttacatttatttgccg |
21526806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University