View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7618_low_11 (Length: 433)
Name: NF7618_low_11
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_low_11 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 79 - 433
Target Start/End: Complemental strand, 21527317 - 21526962
Alignment:
| Q |
79 |
ttcggaaactacattatggtatacttgtatatcaaattagacataacagatatcatggttccaacattttcagcaatatttcaatcatatcagcatcgaa |
178 |
Q |
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| T |
21527317 |
ttcggaaactacattatggtatacttgtatatcaaattagacataacagatatcatggttccaacattttcagcaatatttcaatcatatcagcatcgaa |
21527218 |
T |
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| Q |
179 |
attcgggtcttacaagaaagttctatctaaactaaactacaatcaaacacagatatcagcaccaaattgatgtttgagtaacacaaatttaactgattag |
278 |
Q |
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| T |
21527217 |
attcgggtcttacaagaaagttctatctaaactaaactacaatcaaacacagatatcagcaccaaattgatgtttgagtaacacaaatttaactgattag |
21527118 |
T |
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| Q |
279 |
tgattacatcaatattttcagttattaatcaattagagtcttgtaattcttccat-nnnnnnntagtcaactcactgtatctaaactcagaatttgtatc |
377 |
Q |
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| T |
21527117 |
tgattacatcaatattttcagttattaatcaattagagtcttataactcttccataaaaaaaatagtcaactcactgtatctaaactcagaatttgtatc |
21527018 |
T |
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| Q |
378 |
ctagactatggtaaagttgaattagaggaaaaacagaaccgatgatattaaattaa |
433 |
Q |
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| T |
21527017 |
ctagactatggtacagttgaattagagggaaaacagaagcgatgatattaaattaa |
21526962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 51
Target Start/End: Complemental strand, 21527373 - 21527344
Alignment:
| Q |
22 |
tggctgatccatataaagtggaaaatcagc |
51 |
Q |
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| T |
21527373 |
tggctgatccatataaagtggaaaatcagc |
21527344 |
T |
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