View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7618_low_14 (Length: 410)
Name: NF7618_low_14
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 25 - 391
Target Start/End: Complemental strand, 37417334 - 37416968
Alignment:
| Q |
25 |
ataccatagtgccaccgaaaccaatggatgttgctataacaattgaggatgggtcaaaagcctatgaagatatcactttgtcattcatttttctgttaaa |
124 |
Q |
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| T |
37417334 |
ataccatagtgccaccgaaaccaatggatgttgctataacaattgaggatgggtcaaaagcctatgaagatatcactttgtcattcatttttctgttaaa |
37417235 |
T |
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| Q |
125 |
tgatcattgatcagttctacaatttgaagggtattgtacttttaatcgctttgagttctacaatttgatcagggtgttgtactttgaaatatgagtggaa |
224 |
Q |
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| T |
37417234 |
taatcattgatcagttctacaatttgaagggtattgtacttttaatcgctttgagttctacaatttgatcagggtgttgtactttgaaatatgagtggaa |
37417135 |
T |
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| Q |
225 |
aatcttggttaaaagcgcttggacaatatcagggagcttttgatgaaaacggcaacttagttttttcgtatatttttactattggaaaaactgtgatgac |
324 |
Q |
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| T |
37417134 |
aatcttggttaaaagcgcttggacaatatcaggcagcttttgatgaaaacggcaacttagttttttcttatatttttactattggaaaaactgtgatgac |
37417035 |
T |
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| Q |
325 |
aatttctgttggaaataatgctgtcaagtcatttgaggtgtttggaacacctctggattgtgtcatt |
391 |
Q |
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| T |
37417034 |
aatttctgttggaaataatgctgtcaagtcatttgaggtgtttggaacacttgtggattgtgtcatt |
37416968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 25 - 391
Target Start/End: Complemental strand, 37424866 - 37424500
Alignment:
| Q |
25 |
ataccatagtgccaccgaaaccaatggatgttgctataacaattgaggatgggtcaaaagcctatgaagatatcactttgtcattcatttttctgttaaa |
124 |
Q |
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| T |
37424866 |
ataccatagtgccaccgaaaccaatggatgttgctataacaattgaggatgggtcaaaagcctatgaagatatcactttgtcattcatttttctgttaaa |
37424767 |
T |
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| Q |
125 |
tgatcattgatcagttctacaatttgaagggtattgtacttttaatcgctttgagttctacaatttgatcagggtgttgtactttgaaatatgagtggaa |
224 |
Q |
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| T |
37424766 |
taatcattgatcagttctacaatttgaagggtattgtacttttaatcgctttgagttctacaatttgatcagggtgttgtactttgaaatatgagtgaaa |
37424667 |
T |
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| Q |
225 |
aatcttggttaaaagcgcttggacaatatcagggagcttttgatgaaaacggcaacttagttttttcgtatatttttactattggaaaaactgtgatgac |
324 |
Q |
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| T |
37424666 |
aatcttggttaaaagcgcttggacaatatcaggcagcttttgatgaaaacggcaacttagttttttcatatatttttactattggaaaaactgtgatgac |
37424567 |
T |
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| Q |
325 |
aatttctgttggaaataatgctgtcaagtcatttgaggtgtttggaacacctctggattgtgtcatt |
391 |
Q |
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| T |
37424566 |
aaattctgttggaaataatgctgtcaagtcatttgaggtgtttggaacacttgtggattgtgtcatt |
37424500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 38358876 - 38358848
Alignment:
| Q |
137 |
agttctacaatttgaagggtattgtactt |
165 |
Q |
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| T |
38358876 |
agttctacaatttgaagggtattgtactt |
38358848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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