View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7618_low_16 (Length: 376)
Name: NF7618_low_16
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 335; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 9 - 359
Target Start/End: Original strand, 3328550 - 3328900
Alignment:
| Q |
9 |
gaagaatattcctaaacttataaccaccaccgctattgtttaaactgagtgaaacggtgcgttttgatgatgatgccacacgtgtgaggttgttgaagta |
108 |
Q |
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| T |
3328550 |
gaagaatattcctaaacttataaccaccaccgctattgtttaaactgagtgaaacggtgcgttttgatgatgatgccacacgtgtgaggttgttgaagta |
3328649 |
T |
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| Q |
109 |
aagataattagaaagaagtgaagctggtgaacatgcttctgaagttaggttaagaaacgacgacgtatcgagtgtgaatcgaccaattcgtgaacctaat |
208 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3328650 |
aagataattagaaagaagtgaagctggtgaacatgcttctgaagttaggtttagaaacgacgacgtatcgagtgtgaatcgaccaattcgtgaacctaat |
3328749 |
T |
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| Q |
209 |
tcaagaaccgcattgggttcttttgtaacacgcgtagctggattatacataataggataattagtttgttaattttgtgtaatgaggttgaagaggttaa |
308 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3328750 |
tcaagaaccgcatttggttcttttgtaacacgcgtagctggattatacataataggataattagtttgttaattttgtgtaatgaggttgaagaggttaa |
3328849 |
T |
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| Q |
309 |
ggttttggaagtgaaatgtgtacattcatcggagaaaatgaggttgttgtg |
359 |
Q |
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|||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
3328850 |
ggttttggaagtgaaacgtgttcattcatcggagaaaatgaggttgttgtg |
3328900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 9 - 276
Target Start/End: Original strand, 10027024 - 10027291
Alignment:
| Q |
9 |
gaagaatattcctaaacttataaccaccaccgctattgtttaaactgagtgaaacggtgcgttttgatgatgatgccacacgtgtgaggttgttgaagta |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
10027024 |
gaagaatattcctaaacttataaccaccaccgctattgtttaaactgagtgaaacggtgcgttttgatgatgatgccacacgtgtgaggttgttgaagga |
10027123 |
T |
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| Q |
109 |
aagataattagaaagaagtgaagctggtgaacatgcttctgaagttaggttaagaaacgacgacgtatcgagtgtgaatcgaccaattcgtgaacctaat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10027124 |
aagataattagaaagaagtgaagctggtgaacatgcttctgaagttaggttaagaaacgacgacgtatcgagtgtgaatcgaccaattcgtgaacctaat |
10027223 |
T |
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| Q |
209 |
tcaagaaccgcattgggttcttttgtaacacgcgtagctggattatacataataggataattagtttg |
276 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10027224 |
tcaagaaccgcattgggttcttttgtaacacgcgtagctggattatacataataggataattagtttg |
10027291 |
T |
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