View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7618_low_2 (Length: 969)
Name: NF7618_low_2
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 877; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 877; E-Value: 0
Query Start/End: Original strand, 17 - 957
Target Start/End: Complemental strand, 40061599 - 40060644
Alignment:
| Q |
17 |
cagtattaagtactacattcttgcaatctggtaagatgctaacagaccatgcaggcaagtgatatgaattgccactgaaatttacagttttatcactttt |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40061599 |
cagtattaagcactacattcttgcaatctggtaagatgctaacagaccatgcaggcaagtgatatgaattgccactgaaatttacagttttatcactttt |
40061500 |
T |
|
| Q |
117 |
agtgtccacgttggcgagaaaggcagcacatacagatcctgtcttataaactgccgcctgcgttttaaatagtaaaagactgttgagacctaatctagtt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40061499 |
agtgtccacgttggcgagaaaggcagcacatacagatcctgtcttataaactgccgcctgcgttttaaatagtaaaagactgttgagacctaatctagtt |
40061400 |
T |
|
| Q |
217 |
agtgcctaaaatagtggttgtggcaaaattgtactcaatgcagggaattttccagagaaagattgacaaactggatgagttttagttacaaaataaattc |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40061399 |
agtgcctaaaatagtggttgtggcaaaattgtactcaatgcagggaattttccagagaaagattgacaaactggatgagttttagttacaaaataaattc |
40061300 |
T |
|
| Q |
317 |
tatccaaagacgcgaaataagataaacgggcaaaaatttcaatataaaccgcctctacctctaggtttggaccaagagaagtaatcttgggttctgtagc |
416 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
40061299 |
tatcctaagacgcgaaataagataaacgggcaaaaatttcaatataaaccgcctctacctctaggtttggaccaagagaagtaatcttaggttctgtagc |
40061200 |
T |
|
| Q |
417 |
tattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatatt |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40061199 |
tattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgcagtatatagcaaatatatt |
40061100 |
T |
|
| Q |
517 |
aa--------------aaaacacaattgtccagtgtaatttctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcgat |
602 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40061099 |
aaaaaatatatattaaaaaacacaattgtccagtgtaatttctcttgtgcatataagaaataaactatgcatgtgatattattaatttatcttcttcgat |
40061000 |
T |
|
| Q |
603 |
gtattaccagtggtaca-tttgtgatggctacaacatgaacatcatatatttagtatgtaggctgaaggacataccatattcatcaatcggtgcatcaaa |
701 |
Q |
| |
|
|||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40060999 |
gtattaccggtggtacattttgtgatggctacaacatgaacaacatatatttagtatgtaggctgaaggacataccatattcatcaatcggtgcatcaaa |
40060900 |
T |
|
| Q |
702 |
atcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgtttttgagcaggcaataaaaaatgatacagtatc |
801 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40060899 |
atcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgtttttgagcaggcaataaaaaatgatacagtatc |
40060800 |
T |
|
| Q |
802 |
aactaattcctcttaaaaactggccttaagaacaataccatatagtaaattgaacttgtgaagaacatttcaggttgcaataccatataataattttgaa |
901 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
40060799 |
aactaattcctcttaaaaactggccttaagaacaataccatatagtaaattgaacttgtgaagaacatttcaggttgcaataccatatagtaattttgaa |
40060700 |
T |
|
| Q |
902 |
atgttccacctcgttggaaaaagcgtgccacagcaaatgcaagatcttccacaggt |
957 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40060699 |
atgttccacctcgttggaaaaagcgtgccacagcaaatgcaagatcttccacaggt |
40060644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 17 - 957
Target Start/End: Complemental strand, 40079745 - 40078766
Alignment:
| Q |
17 |
cagtattaagtactacattcttgcaatctggtaagatgctaacagaccatgcaggcaagtgatatgaattgccactgaaatttacagttttatcactttt |
116 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
40079745 |
cagtattaagcactacattcttgcaatctggtaagatgctcacagaccatgcaggcaagtgatatgaattgccactgaaatttacggttttatcattttt |
40079646 |
T |
|
| Q |
117 |
agtgtccacgttggcgagaaaggcagcacatacagatcctgtcttataaactgccgcctgcgttttaaatagtaaaagactgttgagacctaatctagtt |
216 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| ||||||||||| |
|
|
| T |
40079645 |
agtatccacgttggcgagaaaggcagcacatacagatcctgtcttataaactgccgcctgcggtttaaatagtaaaagactgttaagaactaatctagtt |
40079546 |
T |
|
| Q |
217 |
agtgcctaaaatagtggttgtggcaaaattgtactcaatgcagggaattttccagaga-----------aagattgacaaactggatgagttttagttac |
305 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||| || || |||||||||| |
|
|
| T |
40079545 |
agtgccgaaaatagtggctgtggaaaaattgcactcaatggagggaattttccagagaaagtaacttacaagattgacaaactagaagaattttagttac |
40079446 |
T |
|
| Q |
306 |
aa------aataaattctatccaaagacgcgaaataagat-----aaacgggcaaaaatttcaatataaaccgcctctacctctaggtttggaccaagag |
394 |
Q |
| |
|
|| | | |||||||| |||||| | | |||||| ||| | |||||||||||||| | ||| ||| ||||||||||||| ||||||||| |
|
|
| T |
40079445 |
aatgatccagatatttctatcctaagacgtggagtaagatgtttcgaacagacaaaaatttcaatacataccacctatacctctaggttttgaccaagag |
40079346 |
T |
|
| Q |
395 |
aagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgaccccacttcggctgcctaataattcc |
494 |
Q |
| |
|
| | ||||||||| || |||||||||| ||||| ||||||||||||| ||||||||| | ||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
40079345 |
atgaaatcttgggatcagtagctattagtgcttcttcacaaagctttatggccttgtgtacatctttaagatgaccccacttttgctgcctaataattcc |
40079246 |
T |
|
| Q |
495 |
tgcagtatatagcaaatatattaaa-aaacac----aattgtccagtgtaatttctcttgtgcatataagaaataaactatgcatgtgatattattaatt |
589 |
Q |
| |
|
||||| ||||| | | |||||||| | |||| ||||||||||||||||||||||| | ||| |||||| |||||||| ||| |||||||||||| |
|
|
| T |
40079245 |
tgcagcgtatagtagagatattaaacacacacagaaaattgtccagtgtaatttctcttctaaataaaagaaaataactatgcgtgtaatattattaatt |
40079146 |
T |
|
| Q |
590 |
tatcttctt-------cgatgtattaccagtggtacatttgtgatggctacaacatgaacatcatatatttagtatgtaggctgaagga--cataccata |
680 |
Q |
| |
|
||||||||| ||| |||||||||||||| |||||| ||||||||||||||||||| ||||| | |||| ||| |||| || ||||||||| |
|
|
| T |
40079145 |
tatcttcttcgaggaccgaggtattaccagtggtgcatttgcgatggctacaacatgaacaaaatata-ctcgtattaaggttgaaagagtcataccata |
40079047 |
T |
|
| Q |
681 |
ttcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgtttttgagcaggc |
780 |
Q |
| |
|
|||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |
|
|
| T |
40079046 |
ctcatcaatcggtgcatcataatcataacttgtagcaatgaaaggtccgccggtacttcggtcaaagttggttcctccatggtactgtttttgggcaagc |
40078947 |
T |
|
| Q |
781 |
aataaaaaatgatacagtatcaactaattcctctta-----aaaactggccttaag-aacaataccatatagtaaattgaacttgtgaagaacatttcag |
874 |
Q |
| |
|
|||||||||||||| ||||| | ||||||||||||| || | | | ||| || | || |||||| |||||||||||| ||| |||||||||| |
|
|
| T |
40078946 |
aataaaaaatgataaagtattagctaattcctcttagagccaatttttccgtgaagtaatactatcatata--aaattgaacttgcgaacaacatttcag |
40078849 |
T |
|
| Q |
875 |
gttgcaataccatataataattttgaaatgttccacctcgttggaaaaagcgtgccacagcaaatgcaagatcttccacaggt |
957 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40078848 |
gttgcaataccatatagtagttttgaaatgttccaccacgttggaaaaagcgtgccacagcaaatgcaagatcttccacaggt |
40078766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 278 - 816
Target Start/End: Complemental strand, 40087228 - 40086684
Alignment:
| Q |
278 |
attgacaaactggatgagttttagttacaaaataaattctatccaaagacgcgaaataagat-----aaacgggcaaaaatttcaatataaaccgcctct |
372 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||||| |||||||||||||||||||| || | |
|
|
| T |
40087228 |
attgacaaaccagatgagttttagttacaaaataaattatatcctaagacgcggaataagatgtttcaaacgaacaaaaatttcaatataaaccatctat |
40087129 |
T |
|
| Q |
373 |
acctctaggtttggaccaagagaagtaatcttgggttctgtagctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgacccc |
472 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
40087128 |
acctctaggtttggaccaagataagtaatcttgggttctgcggctattaatgcttcttcacaaagctttatggccttgtgcacatctttaagatgacccc |
40087029 |
T |
|
| Q |
473 |
acttcggctgcctaataattcctgcagtatatagcaaatatattaaaaaacacaattgtccagtgtaatttctcttgtgcatataagaaataaactatgc |
572 |
Q |
| |
|
|||||||||||||||||| |||||||| || |||| || ||||||||||| |||| ||||||||||||||||||| | ||||||||||||||||||| | |
|
|
| T |
40087028 |
acttcggctgcctaataactcctgcagcatgtagcgaagatattaaaaaatccaatcgtccagtgtaatttctcttctacatataagaaataaactatcc |
40086929 |
T |
|
| Q |
573 |
atgtgatattattaatttatcttcttcgatgtattaccagtggtacatttgtgatggctacaacatgaacatcatatattt-agtatgtaggctgaagga |
671 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| ||| |||| | || | ||| ||||||| |
|
|
| T |
40086928 |
atgtgatattatcaatttatcttcttcgatgtattaccagtgttgtatttgtgacggctacaacatgaaca--atagatttcaataagaaggttgaagga |
40086831 |
T |
|
| Q |
672 |
--cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgtt |
769 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40086830 |
gtcataccatactcatcaatcggtgcatcaaaatcataacttgttgcaatgaatggtcctccagtacttcggtcaaagttggttcctccatggtactgtt |
40086731 |
T |
|
| Q |
770 |
tttgagcaggcaataaaaaatgatacagtatcaactaattcctctta |
816 |
Q |
| |
|
||| || ||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
40086730 |
tttagtcaagcaatgaaaaatgatacagtatcagctaattcctctta |
40086684 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 40087448 - 40087268
Alignment:
| Q |
17 |
cagtattaagtactacattcttgcaatctggtaagatgctaacagaccatgcaggcaagtgatatgaattgccactgaaatttacagttttatcactttt |
116 |
Q |
| |
|
|||||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |
|
|
| T |
40087448 |
cagtattaagcactacattcttgcaatctggcaagatgctcacagaccatgcaggcaagtgatatgaattgccactgaaatttacggttttatcagattt |
40087349 |
T |
|
| Q |
117 |
agtgtccacgttggcgagaaaggcagcacatacagatcctgtcttataaactgccgcctgcgttttaaatagtaaaagact |
197 |
Q |
| |
|
| |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||| | |||||||||||| |
|
|
| T |
40087348 |
ggcgtccacattggcgagaaaggcagcacatacagatcctgtcttataaacggccgcctgcggttttattagtaaaagact |
40087268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 852 - 957
Target Start/End: Complemental strand, 40086644 - 40086539
Alignment:
| Q |
852 |
tgaacttgtgaagaacatttcaggttgcaataccatataataattttgaaatgttccacctcgttggaaaaagcgtgccacagcaaatgcaagatcttcc |
951 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |
|
|
| T |
40086644 |
tgaacttgtgaagaacatttcaggttgcaataccatatagtaattttgaaatgttccacctcgttggaaaaagcgtgcgacagcaaatgcgagatcttcc |
40086545 |
T |
|
| Q |
952 |
acaggt |
957 |
Q |
| |
|
|||||| |
|
|
| T |
40086544 |
acaggt |
40086539 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 415 - 498
Target Start/End: Original strand, 22014230 - 22014313
Alignment:
| Q |
415 |
gctattaacgcttcctcacaaagctttacggccttgtgcaaatctttaagatgaccccacttcggctgcctaataattcctgca |
498 |
Q |
| |
|
||||| || ||||| ||||||||||||| |||||||||||||||||||||||||||||| || ||||| |||||| ||||||| |
|
|
| T |
22014230 |
gctatcaatgcttcttcacaaagctttatggccttgtgcaaatctttaagatgaccccatttgggctgtctaatatctcctgca |
22014313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 17 - 86
Target Start/End: Original strand, 22013925 - 22013994
Alignment:
| Q |
17 |
cagtattaagtactacattcttgcaatctggtaagatgctaacagaccatgcaggcaagtgatatgaatt |
86 |
Q |
| |
|
||||||| ||||| ||||| ||||| || ||||||||||| ||||||||| ||||||||||||||||||| |
|
|
| T |
22013925 |
cagtattgagtacaacatttttgcagtccggtaagatgctcacagaccatccaggcaagtgatatgaatt |
22013994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 672 - 782
Target Start/End: Original strand, 22014420 - 22014530
Alignment:
| Q |
672 |
cataccatattcatcaatcggtgcatcaaaatcgtaacttgtagcaatgaatggtccgccggtacttcggtcaaagttggttcctccatggtactgtttt |
771 |
Q |
| |
|
||||||||| |||||||| ||||||||| |||| ||||| || | |||||| ||||| || || |||| ||||||| || ||||||||||||| |||| |
|
|
| T |
22014420 |
cataccatactcatcaatgggtgcatcataatcataactcgttgaaatgaaaggtccacccgttgttcgaccaaagttagtccctccatggtactatttt |
22014519 |
T |
|
| Q |
772 |
tgagcaggcaa |
782 |
Q |
| |
|
||||| |||| |
|
|
| T |
22014520 |
agagcaagcaa |
22014530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 882 - 953
Target Start/End: Original strand, 22014765 - 22014836
Alignment:
| Q |
882 |
taccatataataattttgaaatgttccacctcgttggaaaaagcgtgccacagcaaatgcaagatcttccac |
953 |
Q |
| |
|
|||||| || ||||||||||| |||||||| || || |||||||| || || ||||| |||||||||||||| |
|
|
| T |
22014765 |
taccatgtagtaattttgaaaagttccaccccgctgaaaaaagcgcgcaacggcaaaagcaagatcttccac |
22014836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 881 - 957
Target Start/End: Complemental strand, 35257931 - 35257855
Alignment:
| Q |
881 |
ataccatataataattttgaaatgttccacctcgttggaaaaagcgtgccacagcaaatgcaagatcttccacaggt |
957 |
Q |
| |
|
||||||||||||||||||||| |||| || || |||||||| || || |||||||||||||| ||||| |||||| |
|
|
| T |
35257931 |
ataccatataataattttgaagacttcctccacgctggaaaaaacgcgcaacagcaaatgcaaggtcttcaacaggt |
35257855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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