View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7618_low_20 (Length: 338)
Name: NF7618_low_20
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 37417327 - 37417633
Alignment:
| Q |
16 |
tatggtatccaatgaaatttgcacgatcttgtaacatgaggaacgaactgcatctaactcaagaccatagaaggagtccaagttcaattgacggggtgga |
115 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37417327 |
tatggtatccgatgaaatttgcacgatcttgtaacatgaggaacgaactgcatctaactcaagaccatagaaggagtccaagttcaattgacggggtgga |
37417426 |
T |
|
| Q |
116 |
gtatgagaaaacattctaaaactgtgaagaggaaacccttaattagatttctctcctattctcttttgtccgttcgcaatctttcaataaaattgtttat |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37417427 |
gtatgagaaaacattctaaaactgtgaagaggaaacccttt----gatttctctcctattctcttttgtccgttcgcaatctttcaataaaattgtttat |
37417522 |
T |
|
| Q |
216 |
tcttttccattcaattctttggttcctaacaaaacacttaatactaatatgtggacatgatatagaaaatcatgtgaagcttaaaatcaaatgcacttac |
315 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
37417523 |
tcttttccattcaattctttggttcctaac-aaacacttaagactaatatgtggacataatatagaaaactatgtgaagcttaaaatcaaatgcacttac |
37417621 |
T |
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| Q |
316 |
atctccattcat |
327 |
Q |
| |
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|||||||||||| |
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| T |
37417622 |
atctccattcat |
37417633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 16 - 327
Target Start/End: Original strand, 37424859 - 37425165
Alignment:
| Q |
16 |
tatggtatccaatgaaatttgcacgatcttgtaacatgaggaacgaactgcatctaactcaagaccatagaaggagtccaagttcaattgacggggtgga |
115 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
37424859 |
tatggtatcctatgaaatttgcacgatcttgtaacatgaggaacgaactgcatctaactcaagaccatagaaggagtccaagttcaattgactgggtgga |
37424958 |
T |
|
| Q |
116 |
gtatgagaaaacattctaaaactgtgaagaggaaacccttaattagatttctctcctattctcttttgtccgttcgcaatctttcaataaaattgtttat |
215 |
Q |
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| T |
37424959 |
gtttgagaaaacattctaaaactgtgaagaggaaacccttt----gatttctctcctattctcttttgtccgttctcaatctttcaataaaattgtttat |
37425054 |
T |
|
| Q |
216 |
tcttttccattcaattctttggttcctaacaaaacacttaatactaatatgtggacatgatatagaaaatcatgtgaagcttaaaatcaaatgcacttac |
315 |
Q |
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|||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||| |
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| T |
37425055 |
tcttttccattcaattctttggttcctaac-aaacacttaagactaatatgtggacataatatagaaaactatgtgaagcttaaaatcaaatgcacttac |
37425153 |
T |
|
| Q |
316 |
atctccattcat |
327 |
Q |
| |
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|||||||||||| |
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| T |
37425154 |
atctccattcat |
37425165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 160 - 247
Target Start/End: Original strand, 34317819 - 34317906
Alignment:
| Q |
160 |
agatttctctcctattctcttttgtccgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaa |
247 |
Q |
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| T |
34317819 |
agatttctctcctattctcctttatcctttctcaatctttcaataaaatagttcattattttcaattcaattcttaggttcctaacaa |
34317906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 165 - 247
Target Start/End: Original strand, 10057358 - 10057440
Alignment:
| Q |
165 |
tctctcctattctcttttgtccgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaa |
247 |
Q |
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|||||||||||||| ||||||| ||| ||||||||||||||||||||| ||| |||| |||||| ||||||||||||||| |
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| T |
10057358 |
tctctcctattctcgtttgtcctttctcaatctttcaataaaattgttcgttcctttcatatcaattttttggttcctaacaa |
10057440 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 160 - 244
Target Start/End: Original strand, 7872062 - 7872146
Alignment:
| Q |
160 |
agatttctctcctattctcttttgtccgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaa |
244 |
Q |
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||||||||||| ||||||| ||| ||| || |||| |||||||||||||||| ||||||||| ||||||| ||| ||||||||| |
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| T |
7872062 |
agatttctctcatattctcatttatcctttatcaatatttcaataaaattgttcattcttttcaattcaatacttgggttcctaa |
7872146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 246
Target Start/End: Original strand, 43672413 - 43672464
Alignment:
| Q |
195 |
tctttcaataaaattgtttattcttttccattcaattctttggttcctaaca |
246 |
Q |
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| T |
43672413 |
tctttcaataaaattgtccattcttttccattcaattcttgggttcctaaca |
43672464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 250
Target Start/End: Original strand, 50891041 - 50891124
Alignment:
| Q |
167 |
tctcctattctcttttgtccgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaaaac |
250 |
Q |
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||||| |||||| ||| ||| ||| ||||||||||||||||||| | ||| ||||| ||| || |||| ||||||||||||||| |
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| T |
50891041 |
tctcccattctcctttatcctttctcaatctttcaataaaattgctcatttttttcaatttaactcttgggttcctaacaaaac |
50891124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 197 - 244
Target Start/End: Complemental strand, 52127714 - 52127667
Alignment:
| Q |
197 |
tttcaataaaattgtttattcttttccattcaattctttggttcctaa |
244 |
Q |
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|||||||||||||||| ||||||||| |||||||| || ||||||||| |
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| T |
52127714 |
tttcaataaaattgttgattcttttcaattcaattattgggttcctaa |
52127667 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 248
Target Start/End: Original strand, 30029391 - 30029478
Alignment:
| Q |
160 |
agatttctctcctattctcttttgtccgttcgcaatctttcaataaaattgtttattcttttccattcaattctttggttcctaacaaa |
248 |
Q |
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||||||||||| |||||| |||| ||| ||| || ||||| ||||||| | || | ||||||| ||||||||| | ||||||||||||| |
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| T |
30029391 |
agatttctctcatattctattttatcctttctcattctttaaataaaactattcactcttttcaattcaattc-tgggttcctaacaaa |
30029478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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