View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7618_low_21 (Length: 321)

Name: NF7618_low_21
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7618_low_21
NF7618_low_21
[»] chr7 (4 HSPs)
chr7 (21-154)||(38644026-38644159)
chr7 (40-111)||(13597704-13597775)
chr7 (268-305)||(38644284-38644321)
chr7 (157-190)||(38644173-38644206)
[»] chr3 (1 HSPs)
chr3 (34-111)||(37609886-37609963)
[»] chr2 (1 HSPs)
chr2 (23-111)||(38235520-38235608)


Alignment Details
Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 21 - 154
Target Start/End: Original strand, 38644026 - 38644159
Alignment:
Q  21 atcaccaccaacgccgccgccgtgccgtaaacatgagaagacgaagctacaagtaagcgaaggatcagagtgggaactcagaaccggaatcataatcgaa 120  Q
    |||||||||||||||||| |||||| ||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  38644026 atcaccaccaacgccgccaccgtgctgtaagtatgagaagacgaagctacaagtaagcgaaggatcagagtgggaactcagaaccggaatcagaatcgaa 38644125  T
Q  121 atggtcggagtgagcttaggtagacggaaaggga 154  Q
    |||||||||||||||||||||||||| |||||||    
T  38644126 atggtcggagtgagcttaggtagacgaaaaggga 38644159  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 40 - 111
Target Start/End: Original strand, 13597704 - 13597775
Alignment:
Q  40 ccgtgccgtaaacatgagaagacgaagctacaagtaagcgaaggatcagagtgggaactcagaaccggaatc 111  Q
    |||||||| ||||| |||||||||||| ||||||||||| ||||||||||| ||||||||| ||||||||||    
T  13597704 ccgtgccggaaacaagagaagacgaagttacaagtaagcaaaggatcagagagggaactcataaccggaatc 13597775  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 268 - 305
Target Start/End: Original strand, 38644284 - 38644321
Alignment:
Q  268 ttgttaattttgttacacttgttcccagaagatgatgt 305  Q
    |||||||||||||||||||||||||| |||||||||||    
T  38644284 ttgttaattttgttacacttgttccctgaagatgatgt 38644321  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 38644173 - 38644206
Alignment:
Q  157 ccaccgccgaaggttgttggggacacaaacgacg 190  Q
    ||||||||| ||||||||||||||||||||||||    
T  38644173 ccaccgccggaggttgttggggacacaaacgacg 38644206  T

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Target: chr3 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 34 - 111
Target Start/End: Original strand, 37609886 - 37609963
Alignment:
Q  34 ccgccgccgtgccgtaaacatgagaagacgaagctacaagtaagcgaaggatcagagtgggaactcagaaccggaatc 111  Q
    ||||| |||||||| ||||| |||||||||||| ||||||||||||||||||||||| ||||||||| ||||||||||    
T  37609886 ccgccaccgtgccggaaacaagagaagacgaagttacaagtaagcgaaggatcagagagggaactcataaccggaatc 37609963  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 111
Target Start/End: Original strand, 38235520 - 38235608
Alignment:
Q  23 caccaccaacgccgccgccgtgccgtaaacatgagaagacgaagctacaagtaagcgaaggatcagagtgggaactcagaaccggaatc 111  Q
    |||||||| | ||||| |||||||| ||||| ||||||| |||| ||||||||| ||||||||||||| ||||||||||||||||||||    
T  38235520 caccaccaccaccgccaccgtgccggaaacaagagaagatgaagttacaagtaaacgaaggatcagagagggaactcagaaccggaatc 38235608  T

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