View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7618_low_28 (Length: 243)
Name: NF7618_low_28
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_low_28 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 4201168 - 4200950
Alignment:
| Q |
8 |
gaagtctggagacccgtgcgaatgcaaagatattttgctagtttgactgtataagaaaatcttatatataagttttgaatgtggagaggtcatttgtagc |
107 |
Q |
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| T |
4201168 |
gaagtctggagacccgtgtgaatgcaaaggtatcttgctagtttgactgtataagaaaatcttgtgtataagttttgaatgtggagaggtcatttgtagc |
4201069 |
T |
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| Q |
108 |
cgcaaagagtttatcaacaaattggataacctccataaaatcaatgttgggaaatgaagtgcttaaaagttttattgtcatgatgcgtacaaaagcaaca |
207 |
Q |
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| T |
4201068 |
cgcaaagagtttatcaacaaattggataacctccataacatcaaagttgggaaatgaactgcttaaaagttttattgtcatgatgcgtacaaaagcaaca |
4200969 |
T |
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| Q |
208 |
ttatttcggtatggatatg |
226 |
Q |
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| T |
4200968 |
ttactttggtatggatatg |
4200950 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 1530111 - 1530021
Alignment:
| Q |
49 |
tttgactgtataagaaaatcttatatataagttttgaatgtggagaggtcatttgtagccgcaaagagtttatcaacaaattggataacct |
139 |
Q |
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| T |
1530111 |
tttgattgtataagaaaatcccgtatgtgagttttgaatgtggagaggtcatttgtggactcaaaaagtccattaacaaattgggtaacct |
1530021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 49 - 139
Target Start/End: Original strand, 29740514 - 29740604
Alignment:
| Q |
49 |
tttgactgtataagaaaatcttatatataagttttgaatgtggagaggtcatttgtagccgcaaagagtttatcaacaaattggataacct |
139 |
Q |
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| T |
29740514 |
tttgactgtatcagaaaatctcgtatatgggttttaaatgtggagagatcatttgtagactcaaatagtccattaacaaattgggtaacct |
29740604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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