View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7618_low_29 (Length: 242)

Name: NF7618_low_29
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7618_low_29
NF7618_low_29
[»] chr1 (4 HSPs)
chr1 (19-242)||(50240885-50241108)
chr1 (112-160)||(7120073-7120121)
chr1 (114-154)||(13037793-13037833)
chr1 (114-162)||(45975861-45975909)
[»] chr4 (6 HSPs)
chr4 (114-160)||(24160596-24160642)
chr4 (114-159)||(4191663-4191708)
chr4 (117-154)||(46176239-46176276)
chr4 (119-159)||(2980577-2980617)
chr4 (114-154)||(40709481-40709521)
chr4 (114-154)||(47970247-47970287)
[»] chr2 (4 HSPs)
chr2 (114-163)||(17952802-17952851)
chr2 (114-160)||(33197340-33197386)
chr2 (119-151)||(15119921-15119953)
chr2 (114-154)||(31461367-31461407)
[»] chr7 (2 HSPs)
chr7 (112-159)||(47006972-47007019)
chr7 (120-161)||(941466-941507)
[»] chr6 (3 HSPs)
chr6 (119-169)||(31668791-31668841)
chr6 (114-163)||(31461598-31461647)
chr6 (114-154)||(4248887-4248927)
[»] chr8 (4 HSPs)
chr8 (123-160)||(8060585-8060622)
chr8 (117-162)||(26716540-26716585)
chr8 (122-159)||(35534970-35535007)
chr8 (119-159)||(8629033-8629073)
[»] chr5 (2 HSPs)
chr5 (120-169)||(11434964-11435013)
chr5 (119-160)||(20982241-20982282)
[»] chr3 (3 HSPs)
chr3 (114-159)||(16790189-16790234)
chr3 (119-160)||(41028957-41028998)
chr3 (124-160)||(20502187-20502223)
[»] scaffold0654 (1 HSPs)
scaffold0654 (119-163)||(6743-6787)
[»] scaffold0590 (1 HSPs)
scaffold0590 (114-154)||(1175-1215)
[»] scaffold0275 (1 HSPs)
scaffold0275 (114-154)||(2760-2800)
[»] scaffold0014 (1 HSPs)
scaffold0014 (119-163)||(116662-116706)


Alignment Details
Target: chr1 (Bit Score: 216; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 19 - 242
Target Start/End: Complemental strand, 50241108 - 50240885
Alignment:
Q  19 atgacatgttcgctagctactatcagcttatttataattctctctataatagtttatgaaaacgactttcagtttatatgtaagtaatttgactgatctc 118  Q
    ||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50241108 atgacatgtccgctagctactatcagcttatttctaattctctctataatagtttatgaaaacgactttcagtttatatgtaagtaatttgactgatctc 50241009  T
Q  119 ttgttatagaaaaagcttatatataagcacttatatcataagtgcctatgcaatataattaagttgttaatccagacaagaaacttgactgatattaatg 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50241008 ttgttatagaaaaagcttatatataagcacttatatcataagtgcctatgcaatataattaagttgttaatccagacaagaaacttgactgatattaatg 50240909  T
Q  219 gatcaattacttacctcctcttct 242  Q
    ||||||||||||||||||||||||    
T  50240908 gatcaattacttacctcctcttct 50240885  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 7120121 - 7120073
Alignment:
Q  112 tgatctcttgttatagaaaaagcttatatataagcacttatatcataag 160  Q
    |||||| |||||||| ||| || ||||||||||||||||||| ||||||    
T  7120121 tgatcttttgttatataaatagtttatatataagcacttataccataag 7120073  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 13037833 - 13037793
Alignment:
Q  114 atctcttgttatagaaaaagcttatatataagcacttatat 154  Q
    |||| |||||||||||| |||||||| ||||||||||||||    
T  13037833 atcttttgttatagaaatagcttatacataagcacttatat 13037793  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 162
Target Start/End: Complemental strand, 45975909 - 45975861
Alignment:
Q  114 atctcttgttatagaaaaagcttatatataagcacttatatcataagtg 162  Q
    |||| |||||||||||| ||||||| | ||||||||||||| |||||||    
T  45975909 atcttttgttatagaaatagcttatgtgtaagcacttatatgataagtg 45975861  T

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Target: chr4 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 24160596 - 24160642
Alignment:
Q  114 atctcttgttatagaaaaagcttatatataagcacttatatcataag 160  Q
    |||| |||||||||||||||||||| ||||||||||||||| |||||    
T  24160596 atcttttgttatagaaaaagcttatttataagcacttatatgataag 24160642  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 159
Target Start/End: Complemental strand, 4191708 - 4191663
Alignment:
Q  114 atctcttgttatagaaaaagcttatatataagcacttatatcataa 159  Q
    |||| |||||||||||| |||||||| |||||||||||||| ||||    
T  4191708 atcttttgttatagaaatagcttatacataagcacttatatgataa 4191663  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 154
Target Start/End: Original strand, 46176239 - 46176276
Alignment:
Q  117 tcttgttatagaaaaagcttatatataagcacttatat 154  Q
    |||||||||||||| ||||||| |||||||||||||||    
T  46176239 tcttgttatagaaatagcttatgtataagcacttatat 46176276  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 2980577 - 2980617
Alignment:
Q  119 ttgttatagaaaaagcttatatataagcacttatatcataa 159  Q
    |||||||||||| |||||||| |||||||||||||| ||||    
T  2980577 ttgttatagaaatagcttatacataagcacttatatgataa 2980617  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 40709481 - 40709521
Alignment:
Q  114 atctcttgttatagaaaaagcttatatataagcacttatat 154  Q
    |||| |||||||||||| |||||||| ||||||||||||||    
T  40709481 atcttttgttatagaaacagcttataaataagcacttatat 40709521  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 47970287 - 47970247
Alignment:
Q  114 atctcttgttatagaaaaagcttatatataagcacttatat 154  Q
    |||| |||||||||||| |||||||| ||||||||||||||    
T  47970287 atcttttgttatagaaatagcttatacataagcacttatat 47970247  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 114 - 163
Target Start/End: Original strand, 17952802 - 17952851
Alignment:
Q  114 atctcttgttatagaaaaagcttatatataagcacttatatcataagtgc 163  Q
    |||| |||||||||||| ||||||||||||||| ||||||| ||||||||    
T  17952802 atcttttgttatagaaatagcttatatataagctcttatatgataagtgc 17952851  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 160
Target Start/End: Original strand, 33197340 - 33197386
Alignment:
Q  114 atctcttgttatagaaaaagcttatatataagcacttatatcataag 160  Q
    |||| |||||||||||| |||||||| |||||||||||||| |||||    
T  33197340 atcttttgttatagaaatagcttatagataagcacttatatgataag 33197386  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 151
Target Start/End: Complemental strand, 15119953 - 15119921
Alignment:
Q  119 ttgttatagaaaaagcttatatataagcactta 151  Q
    ||||||||||||||||||||| |||||||||||    
T  15119953 ttgttatagaaaaagcttatacataagcactta 15119921  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 31461407 - 31461367
Alignment:
Q  114 atctcttgttatagaaaaagcttatatataagcacttatat 154  Q
    |||| |||||||||||| ||||||||||||| |||||||||    
T  31461407 atcttttgttatagaaatagcttatatataaccacttatat 31461367  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 159
Target Start/End: Complemental strand, 47007019 - 47006972
Alignment:
Q  112 tgatctcttgttatagaaaaagcttatatataagcacttatatcataa 159  Q
    |||||| ||||||||||||||| ||||| |||||||||||||| ||||    
T  47007019 tgatcttttgttatagaaaaagtttatacataagcacttatatgataa 47006972  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 941507 - 941466
Alignment:
Q  120 tgttatagaaaaagcttatatataagcacttatatcataagt 161  Q
    ||||||||||| |||||||||||| |||||||||| ||||||    
T  941507 tgttatagaaatagcttatatatatgcacttatattataagt 941466  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 119 - 169
Target Start/End: Original strand, 31668791 - 31668841
Alignment:
Q  119 ttgttatagaaaaagcttatatataagcacttatatcataagtgcctatgc 169  Q
    |||||||||||| |||||||| |||||||||||||| |||| ||| |||||    
T  31668791 ttgttatagaaatagcttatacataagcacttatatgataattgcttatgc 31668841  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 163
Target Start/End: Complemental strand, 31461647 - 31461598
Alignment:
Q  114 atctcttgttatagaaaaagcttatatataagcacttatatcataagtgc 163  Q
    |||| |||||||||||| |||||||| |||||||||||||  ||||||||    
T  31461647 atcttttgttatagaaatagcttatacataagcacttatacaataagtgc 31461598  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 4248927 - 4248887
Alignment:
Q  114 atctcttgttatagaaaaagcttatatataagcacttatat 154  Q
    |||| ||||||| |||| |||||||||||||||||||||||    
T  4248927 atcttttgttattgaaatagcttatatataagcacttatat 4248887  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 160
Target Start/End: Complemental strand, 8060622 - 8060585
Alignment:
Q  123 tatagaaaaagcttatatataagcacttatatcataag 160  Q
    |||||||| |||||||||||||||||||||| ||||||    
T  8060622 tatagaaatagcttatatataagcacttataccataag 8060585  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 162
Target Start/End: Original strand, 26716540 - 26716585
Alignment:
Q  117 tcttgttatagaaaaagcttatatataagcacttatatcataagtg 162  Q
    |||||||||||||  |||||||| |||||||||||||| |||||||    
T  26716540 tcttgttatagaagtagcttatacataagcacttatataataagtg 26716585  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 159
Target Start/End: Original strand, 35534970 - 35535007
Alignment:
Q  122 ttatagaaaaagcttatatataagcacttatatcataa 159  Q
    ||||||||| ||||||||||||||||||||||| ||||    
T  35534970 ttatagaaatagcttatatataagcacttatatgataa 35535007  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 8629073 - 8629033
Alignment:
Q  119 ttgttatagaaaaagcttatatataagcacttatatcataa 159  Q
    |||||||||||| |||||||| |||||||||||||| ||||    
T  8629073 ttgttatagaaatagcttataaataagcacttatatgataa 8629033  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 11434964 - 11435013
Alignment:
Q  120 tgttatagaaaaagcttatatataagcacttatatcataagtgcctatgc 169  Q
    ||||||||||| ||||||||||||| ||| ||||||||||| || |||||    
T  11434964 tgttatagaaatagcttatatataaacacatatatcataagcgcgtatgc 11435013  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 20982241 - 20982282
Alignment:
Q  119 ttgttatagaaaaagcttatatataagcacttatatcataag 160  Q
    |||||||||||| |||||||| |||||||||||||| |||||    
T  20982241 ttgttatagaaatagcttatacataagcacttatatgataag 20982282  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 114 - 159
Target Start/End: Original strand, 16790189 - 16790234
Alignment:
Q  114 atctcttgttatagaaaaagcttatatataagcacttatatcataa 159  Q
    |||| |||||||||||| | ||||||||||||||||||||| ||||    
T  16790189 atcttttgttatagaaataacttatatataagcacttatatgataa 16790234  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 119 - 160
Target Start/End: Original strand, 41028957 - 41028998
Alignment:
Q  119 ttgttatagaaaaagcttatatataagcacttatatcataag 160  Q
    |||||||||||| |||||||| |||||||||||||| |||||    
T  41028957 ttgttatagaaatagcttatacataagcacttatatgataag 41028998  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 160
Target Start/End: Original strand, 20502187 - 20502223
Alignment:
Q  124 atagaaaaagcttatatataagcacttatatcataag 160  Q
    ||||||| ||||||||||||||||||||||| |||||    
T  20502187 atagaaatagcttatatataagcacttatatgataag 20502223  T

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Target: scaffold0654 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0654
Description:

Target: scaffold0654; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 6743 - 6787
Alignment:
Q  119 ttgttatagaaaaagcttatatataagcacttatatcataagtgc 163  Q
    |||||||||||| || ||||| |||||||||||||| ||||||||    
T  6743 ttgttatagaaatagtttatacataagcacttatatgataagtgc 6787  T

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Target: scaffold0590 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Original strand, 1175 - 1215
Alignment:
Q  114 atctcttgttatagaaaaagcttatatataagcacttatat 154  Q
    |||| |||||||||||| |||||||| ||||||||||||||    
T  1175 atcttttgttatagaaatagcttatacataagcacttatat 1215  T

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Target: scaffold0275 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 154
Target Start/End: Complemental strand, 2800 - 2760
Alignment:
Q  114 atctcttgttatagaaaaagcttatatataagcacttatat 154  Q
    |||| |||||||||||| |||||||| ||||||||||||||    
T  2800 atcttttgttatagaaatagcttatacataagcacttatat 2760  T

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Target: scaffold0014 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 119 - 163
Target Start/End: Original strand, 116662 - 116706
Alignment:
Q  119 ttgttatagaaaaagcttatatataagcacttatatcataagtgc 163  Q
    |||||||||||| || ||||| |||||||||||||| ||||||||    
T  116662 ttgttatagaaatagtttatacataagcacttatatgataagtgc 116706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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