View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7618_low_31 (Length: 241)
Name: NF7618_low_31
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_low_31 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 6e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 5226487 - 5226705
Alignment:
| Q |
1 |
gaaattaaatatgatctatggtgttcacgtaactctattatagtttgacctcttagtcttctcttgtgtgacaaaggaagatacaccaannnnnnnatac |
100 |
Q |
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||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
5226487 |
gaaattaaatatgatctatagtgttcacgtaactctattatagtttgacctcttagtcttctcttgtgtgacaaaggaagatacaccaatttttttagac |
5226586 |
T |
|
| Q |
101 |
aatagtccatttcactttgcgtcaaaccttgggtgagctagtagtgtaactaagaacaaaactttccaataaattttttacttctataagtgtgttttgg |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
5226587 |
aatagtccatttcactttgcatcaaaccttgggtgagctagt---gtaactaagaacaaaactttccaataaattttttacttctttaagtgtgttttgg |
5226683 |
T |
|
| Q |
201 |
atcttcatcttgtagtaagtag |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
5226684 |
atcttcatcttgtagtaagtag |
5226705 |
T |
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