View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7618_low_35 (Length: 235)
Name: NF7618_low_35
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_low_35 |
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Alignment Details
Target: chr5 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 222
Target Start/End: Complemental strand, 24633868 - 24633658
Alignment:
| Q |
12 |
catcagcagttacagggtcaccactcttgctgtttccaattaccattttccctagcctctcccgcatatcagctaaggatgttgtcaatgccaaaacagc |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24633868 |
catcagcagttacagggtcaccactcttgctgtttccaattaccattttccctagcctctcccgcatatcagttaaggatgttgtcaatgccaaaacagc |
24633769 |
T |
|
| Q |
112 |
cattatctcactagcaactgaaatatcaaatgctgtttctcgtaccattcctttctcatcaggtccctggccaacagtaattttccttaagaaccggtca |
211 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24633768 |
cattatctcactagcaactgaaatatcaaatgctgtttctcgtaccattcctttctcatcaggtccctggccaacagtaattttccttaagaaccggtca |
24633669 |
T |
|
| Q |
212 |
ttgatgtccat |
222 |
Q |
| |
|
||||||||||| |
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|
| T |
24633668 |
ttgatgtccat |
24633658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 12 - 222
Target Start/End: Original strand, 52496887 - 52497097
Alignment:
| Q |
12 |
catcagcagttacagggtcaccactcttgctgtttccaattaccattttccctagcctctcccgcatatcagctaaggatgttgtcaatgccaaaacagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
52496887 |
catcagcagttacagggtcaccactcttgctgtttccaattaccattttccctagcctctcccgcatatcagttaaggatgttgtcaatgccaaaacagc |
52496986 |
T |
|
| Q |
112 |
cattatctcactagcaactgaaatatcaaatgctgtttctcgtaccattcctttctcatcaggtccctggccaacagtaattttccttaagaaccggtca |
211 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
52496987 |
cattatctcactagcaactgaaatatcaaatgctgtttctcgtaccattcctttctcatcaggtccctggccaacagtaattttccttaagaaccggtca |
52497086 |
T |
|
| Q |
212 |
ttgatgtccat |
222 |
Q |
| |
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||||||||||| |
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|
| T |
52497087 |
ttgatgtccat |
52497097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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