View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7618_low_37 (Length: 224)

Name: NF7618_low_37
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7618_low_37
NF7618_low_37
[»] scaffold0191 (1 HSPs)
scaffold0191 (1-224)||(29162-29385)
[»] chr6 (1 HSPs)
chr6 (1-224)||(10432915-10433138)
[»] chr3 (1 HSPs)
chr3 (2-224)||(37570833-37571056)


Alignment Details
Target: scaffold0191 (Bit Score: 208; Significance: 1e-114; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 29162 - 29385
Alignment:
Q  1 ggaaacctttcttttgcatccagaagcaccagatgataatttagacaaaccttaagaaccacgcatattgaaatgagtttaatcgatcttgcaacagata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29162 ggaaacctttcttttgcatccagaagcaccagatgataatttagacaaaccttaagaaccacgcatattgaaatgagtttaatcgatcttgcaacagata 29261  T
Q  101 aaagtaaaaggaatgtactaaaaactcttaaatcatacataccattatgaaagttttgaacatattggtcgccagagacagaagttttggaaatgcgagg 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||| ||||||||||||||||||||||    
T  29262 aaagtaaaaggaatgtactaaaaactcttaaatcatacataccattatgaaagttttggacatgttggtcaccagaggcagaagttttggaaatgcgagg 29361  T
Q  201 ctttttgaaagaagaaacatttgc 224  Q
    ||||||||||||||||||||||||    
T  29362 ctttttgaaagaagaaacatttgc 29385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 10433138 - 10432915
Alignment:
Q  1 ggaaacctttcttttgcatccagaagcaccagatgataatttagacaaaccttaagaaccacgcatattgaaatgagtttaatcgatcttgcaacagata 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  10433138 ggaaacctttcttttgcatccagaagcaccagatgataatttagacaaaccgtaagaaccacgcatattgaaatgagtttaatcgatcttgcaacagata 10433039  T
Q  101 aaagtaaaaggaatgtactaaaaactcttaaatcatacataccattatgaaagttttgaacatattggtcgccagagacagaagttttggaaatgcgagg 200  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||||    
T  10433038 aaagtaaaaggaatgtactaaaaactcttaaatcatgcataccattatgaaagttttgaacatgttggtcaccagaggcagaagttttggaaatgcgagg 10432939  T
Q  201 ctttttgaaagaagaaacatttgc 224  Q
    ||||||||| ||||||||||||||    
T  10432938 ctttttgaaggaagaaacatttgc 10432915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 76; Significance: 3e-35; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 37571056 - 37570833
Alignment:
Q  2 gaaacctttcttttgcatccagaagcaccagatgataatttagacaaaccttaagaaccacgcatattgaaatgagtttaatcgatcttgcaacagataa 101  Q
    ||||| ||||||||| |||||||||||||||| ||||||| || |||| |||||||| ||| |||||  |||||||| |||| |||||| ||||  ||||    
T  37571056 gaaacttttcttttgaatccagaagcaccagaggataattgagccaaatcttaagaatcacacatatcaaaatgagtataatagatcttccaaccaataa 37570957  T
Q  102 aagtaaaaggaatgtacta-aaaactcttaaatcatacataccattatgaaagttttgaacatattggtcgccagagacagaagttttggaaatgcgagg 200  Q
    |||| |||| ||||||||| |||||||||||  ||| ||||||||||  ||| | |||||||| |||| | |||||| ||||  | |||||||| |||||    
T  37570956 aagtgaaagaaatgtactaaaaaactcttaagccatgcataccattagaaaaatattgaacatcttggccaccagaggcagagatattggaaattcgagg 37570857  T
Q  201 ctttttgaaagaagaaacatttgc 224  Q
    |||||| || ||||||||| ||||    
T  37570856 ctttttaaaggaagaaacagttgc 37570833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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