View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7618_low_4 (Length: 567)
Name: NF7618_low_4
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 484; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 484; E-Value: 0
Query Start/End: Original strand, 21 - 555
Target Start/End: Original strand, 16691427 - 16691961
Alignment:
| Q |
21 |
cacaggcaaataactattatagttaatatagtcacagatattttaacagcatcaagttataaagaaaatcttttaattacttgaaattctgaactgcttc |
120 |
Q |
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| T |
16691427 |
cacaggcaaataactattatagttaatattgtcacagatattttaacagcatgaagttataaagaaaatcttttaattacttgaaattctgaactgcttc |
16691526 |
T |
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| Q |
121 |
acaagaagacatggaaggtactgagccttgattttggatggatgtatcagaaatttcttctgcaagaaagaaaatgaaagaggaactattttataatgaa |
220 |
Q |
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| T |
16691527 |
acaagaagacatggaaggtactgagccttgattttggatggatggatcagaaatttcttctgcaagaaagaaaatgaaagaggaactattttataatgaa |
16691626 |
T |
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| Q |
221 |
aagagtggctgaaaaatgtgcagtataaggtttattctattcttgaacatcctccaccagtaacaaaagaactttcatacagtaaaagtaaagagtatat |
320 |
Q |
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| T |
16691627 |
aagagtggttgaaaaatgtgtagtataaggtttattctattcttgaacatcctccaccagtaacaaaagaactttcatacagtaaaagtaaagagtatat |
16691726 |
T |
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| Q |
321 |
tgtggataatgaagaagaacaaagaaagataagaaattgtattttcatcttaaatgttaaaatattattatattctgcaatttggatcaaatcactagat |
420 |
Q |
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| T |
16691727 |
tgtggataatgaagaagaacaaagaaagataagaaattgtattttcatcttaaatgttaaaatattattatattctgcaatttggatcaaatcactagat |
16691826 |
T |
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| Q |
421 |
gttccaccttatcttattactctacatgt-aaatcaaactatgccatcataacattaaatttttcttttgccaattttccaaatattcttcttaaaagaa |
519 |
Q |
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| T |
16691827 |
gttccaccttatcttattactctacatgtaaaatcaaactatgccatcataacatt-aatttttcttttgccaattttccaaatattcttcctaaaagaa |
16691925 |
T |
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| Q |
520 |
taaaactagaatgaaaaattctctcagccacaggtt |
555 |
Q |
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| T |
16691926 |
taaaactagaataaataattctctcaaccacaggtt |
16691961 |
T |
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