View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7618_low_6 (Length: 548)
Name: NF7618_low_6
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_low_6 |
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| [»] scaffold0095 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 474; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 8 - 530
Target Start/End: Complemental strand, 1725866 - 1725344
Alignment:
| Q |
8 |
ccaacaatatacttcaactccggatgacctctaatcacctattccattcaaccattcaatagcaagaaataacagagaaagatgagctttgtgcataagc |
107 |
Q |
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| T |
1725866 |
ccaacaaaatacttcaactccggatgacctctaatcacctattccattcaaccattcaatagcaagaaataacagagaaagatgagctttgtgcataagc |
1725767 |
T |
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| Q |
108 |
accactaataaaagaaaatctaacatgcatcaaaatcaacatttttacatagtatttggttgaagagaaatagagacgaggagggtaataattttaaatc |
207 |
Q |
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| T |
1725766 |
accactaataaaaaaaaatctaacatgcatcgaaatcaacatttttacatagtatttggttgaagagaaatagagacgaggagagtaataattttaaatc |
1725667 |
T |
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| Q |
208 |
tttattgtgtgattcaatttcttgaagggaatgggagagtcaaaatcctcttataatgacatgaaaatttataaggatatacaaagtatannnnnnnatg |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
1725666 |
tttattgtgtgattcaatttcttgaagggaatgggagagtcaaaatcctcttataatgacatgaaaatttataaggatatacaaagtatatttttttatg |
1725567 |
T |
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| Q |
308 |
gtcttaatcccccagtttctagggcccctagtaatttggggattgggtggggatgtaaatgaagtctagccaataattgtttcagctaggaatcaaactc |
407 |
Q |
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| T |
1725566 |
gtcttaatcccccagtttctagggcccctagtaatttggggattgggtggggatggaaatgaagtctagccaataattgtttcagctaggaatcaaagtc |
1725467 |
T |
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| Q |
408 |
agatactccagatggattcgactttaactgaagttcatcaaccacttgattaacaaagtacattaagttgaagaattatgcaatgtaaaactctaaaatc |
507 |
Q |
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| T |
1725466 |
agatactccagatggattcgactttaactgaagttcatcaaccacttgattaacaaagtacattaagtttaagaattatgcaatgtaaaactctaaaatc |
1725367 |
T |
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| Q |
508 |
agatttcaccattttagctatat |
530 |
Q |
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| T |
1725366 |
agatttcaccattttagctatat |
1725344 |
T |
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Back To:
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Target: scaffold0095 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0095
Description:
Target: scaffold0095; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 454
Target Start/End: Original strand, 20397 - 20474
Alignment:
| Q |
377 |
ccaataattgtttcagctaggaatcaaactcagatactccagatggattcgactttaactgaagttcatcaaccactt |
454 |
Q |
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| T |
20397 |
ccaataattctttcagccagaactcgaactcagatactcccgattgatttgtccttaactgaagtttattaaccactt |
20474 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 377 - 454
Target Start/End: Complemental strand, 39411384 - 39411307
Alignment:
| Q |
377 |
ccaataattgtttcagctaggaatcaaactcagatactccagatggattcgactttaactgaagttcatcaaccactt |
454 |
Q |
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||||||||| ||||||| || | || |||||||||||||| ||| |||| | | |||||||||||| || |||||||| |
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| T |
39411384 |
ccaataattctttcagccagaactcgaactcagatactcccgattgatttgtccttaactgaagtttattaaccactt |
39411307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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