View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7618_low_7 (Length: 538)
Name: NF7618_low_7
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_low_7 |
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| [»] scaffold0054 (3 HSPs) |
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Alignment Details
Target: scaffold0054 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 225
Target Start/End: Complemental strand, 42899 - 42686
Alignment:
| Q |
17 |
atttgtctatgtggattagattatattcgtcataagaagaaaagtagccgtgagaattgataatagattgttgcggaacatattaat-----gaagcatt |
111 |
Q |
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| T |
42899 |
atttgtctatgtggattagattatattcgtcataagaagaaaagtagcagtgagaattgataatagattgttgcggaacatattaatataatgaagcatt |
42800 |
T |
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| Q |
112 |
tgttttcgaataaaaatgatcatgattttcaaaatggattcaaaaagcttgaaagatttaaaattcagattggagaaggcaatatcatcatgtatatagc |
211 |
Q |
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| T |
42799 |
tgttttcgaataaaaatgatcatgattttcaaaatggattcaaaaagcttgaaagatttaaaattcagattggagaaggcaatatcatcatgtatatagc |
42700 |
T |
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| Q |
212 |
tgttgttcaccttt |
225 |
Q |
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|||||||||||||| |
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| T |
42699 |
tgttgttcaccttt |
42686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 113 - 421
Target Start/End: Complemental strand, 38649 - 38335
Alignment:
| Q |
113 |
gttttcgaataaaaatgatcatgattttcaaaatggattcaaaaagcttgaaagatttaaaattcagattggagaaggcaatatcatcatgtatatagct |
212 |
Q |
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| T |
38649 |
gttttcgaataaaaaggatcatgatttgcaaa-tggattcaaaacgcttgaaagatttaagatgcagattggagaaggcaatatcatcatgtctatagct |
38551 |
T |
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| Q |
213 |
gttgttcacctttttgtttcagagaatgaaattcagcggttgcagatttgaatacgagtgaatgagattgttgaataaagatagcgtgag-------taa |
305 |
Q |
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| T |
38550 |
gttgttcacctttttgtttgagagaatgaagttcagcggttgcagattggaatacgagtgaatgagattgttgaatacagatagcgtgagtagggaatag |
38451 |
T |
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| Q |
306 |
ggatggtgctcgagctggttgtcatggtttgtttagagtgagtaaggatgagtggctttgttgttttgcaaattcgttggagacgtcaagtgtggttttg |
405 |
Q |
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| T |
38450 |
ggatggttctcgagctggtggtcgtggtttgtttagagtgagtaacggtgagtgcctttgttgttttggaaagctcttgtggacgtcaagtgcggttttg |
38351 |
T |
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| Q |
406 |
tggggtgtattggaag |
421 |
Q |
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| T |
38350 |
tggggtgtattggaag |
38335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 417 - 464
Target Start/End: Complemental strand, 38307 - 38260
Alignment:
| Q |
417 |
ggaaggtctagcaccaaaattcatctcagagagttcttgaaatgcttg |
464 |
Q |
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| T |
38307 |
ggaaggtccaacaccaaaattcatctcagtgagttcttcaaatgcttg |
38260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 96; Significance: 8e-47; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 69 - 344
Target Start/End: Original strand, 32958359 - 32958638
Alignment:
| Q |
69 |
agaattgataatagattgttgcggaacatattaatgaagcatttgttttcgaataaaaatgat---catgattttcaaaatggattcaaaaagcttgaaa |
165 |
Q |
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| T |
32958359 |
agaattgacaagagattgttgcagaacatgttaatgaagtatatgttttcgaataaaattaagaaccatgatttgcaaac-gaattcaaaacgcatgaaa |
32958457 |
T |
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| Q |
166 |
gatttaaaattcagattggagaaggcaatatcatcatgtatata--gctgttgttcacctttttgtttcagagaatgaaattcagcggttgcagatttga |
263 |
Q |
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| T |
32958458 |
gatttaagatgaagatcagagaaggcaatatcatcatatatatatagttgttgttcgccttttcttttgagagaatgaagttcagcggttgcagattgga |
32958557 |
T |
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| Q |
264 |
atacgagtgaatgagattgttgaataaagatagcgtgagtaaggatggtgctcgagctggttgtcatggtttgtttagagt |
344 |
Q |
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| T |
32958558 |
atacgagtgaatgagattgttgaatacggatggtacgagtaaggatggtggtcgagatgtttgtggtggtttgtttagagt |
32958638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 86
Target Start/End: Complemental strand, 24415468 - 24415399
Alignment:
| Q |
17 |
atttgtctatgtggattagattatattcgtcataagaagaaaagtagccgtgagaattgataatagattg |
86 |
Q |
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| T |
24415468 |
atttgtctatgaggattagattatattcttcataagaagaacaatagaggtgagaatcgataatagattg |
24415399 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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