View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7618_low_8 (Length: 538)
Name: NF7618_low_8
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 8 - 522
Target Start/End: Complemental strand, 37957817 - 37957303
Alignment:
| Q |
8 |
cgaagaatatacttatcagaacttctagatgaagacattacatcctctaaatccaatttttcatttgatccaaggctcaaacggacaaagattctccttg |
107 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957817 |
cgaagaaaatacttatcagaacttctagatgaagacattacatcctctaaatccaatttttcatttgatccaaggctcaaacggacaaagattctccttg |
37957718 |
T |
|
| Q |
108 |
ttcttgatgatgtgaaagattctgatcaacttgaagatttaattggaacacatcatagtaactttggccaagggagtataatcattgtgactaacagaga |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
37957717 |
ttcttgatgatgtgaaagattctgatcaacttgaagatttaattggaacacatcatagtaactttggccaagggagtagaaccattgtgactaacagaga |
37957618 |
T |
|
| Q |
208 |
caagcaagtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaaaactcttctgttcatttgcttttaaa |
307 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957617 |
caagcaagtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaaaactcttctgttcatttgcttttaaa |
37957518 |
T |
|
| Q |
308 |
caaaaccatccaatagaaccttatgtgagtttatcaaaaaaggtattagattatgctaacggggttccggtagcgcttaaagttttgggcaaatttcttc |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37957517 |
caaaaccatccaatagaaccttatgtgagtttatcaaaaaaggtattagattatgctaacggggttccggtagcgcttaaagttttgggcaaatttcttc |
37957418 |
T |
|
| Q |
408 |
agggcagaaaagaggaagcatgggaaagtcatttgcaaaagctcgaaaagcttccccatgatgaaattttcagtgcgttcaagttgagttatgatggact |
507 |
Q |
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| T |
37957417 |
agggcagaaaagaggaagcatgggaaagtcatttgcaaaagctcgaaaagctttcccatgatgaaattttcagtgcgttcaagttgagttatgatggact |
37957318 |
T |
|
| Q |
508 |
tgacaacgagcaaaa |
522 |
Q |
| |
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||||||||||||||| |
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| T |
37957317 |
tgacaacgagcaaaa |
37957303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 8e-84
Query Start/End: Original strand, 10 - 511
Target Start/End: Original strand, 37929772 - 37930269
Alignment:
| Q |
10 |
aagaatatacttatcagaacttctagatgaagacattacatcctctaaatccaatttttcatttgatccaaggctcaaacggacaaagattctccttgtt |
109 |
Q |
| |
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||||| |||||||||| |||||||||| |||||||||||||||||| || ||| ||||||| ||||||||| |||| |||| ||||||||||| |
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| T |
37929772 |
aagaaaatacttatcacaacttctagaggaagacattacatcctctggattcaagttttcatacattccaaggcttcaacgaggaaaggttctccttgtt |
37929871 |
T |
|
| Q |
110 |
cttgatgatgtgaaagattctgatcaacttgaagatttaattggaacacatcatagtaacttt--ggccaagggagtataatcattgtgactaacagaga |
207 |
Q |
| |
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|||||||| ||||| ||||| ||||||||||||| ||||||||| || ||||| |||| |||| ||||||| ||||||||||| || ||||| |
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| T |
37929872 |
cttgatgacgtgaacgattcagatcaacttgaaggtttaattgg------tcgtagtacctttttggccttgggagtagaatcattgtgagtagtagaga |
37929965 |
T |
|
| Q |
208 |
caagcaagtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaaaactcttctgttcatttgcttttaaa |
307 |
Q |
| |
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|||||||||||| |||||| |||||| |||||||||||| |||| | ||||||| || ||||||||||||| |||||||||||| | |||||||||| |
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| T |
37929966 |
caagcaagtgcttgagaatgccaatgccgatgaaatatatgaagttagggagatggattttcaagattctctacaactcttctgtttaagtgcttttaaa |
37930065 |
T |
|
| Q |
308 |
caaaaccatccaatagaaccttatgtgagtttatcaaaaaaggtattagattatgctaacggggttccggtagcgcttaaagttttgggcaaatttcttc |
407 |
Q |
| |
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|||||| |||||||| || |||||||||| |||||| ||||||||||| |||||||||| || ||||| |||| || ||||||||||| ||| |||| |
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| T |
37930066 |
caaaactatccaatataaacttatgtgagcttatcagaaaaggtattaaattatgctaaaggagttccattagctctcaaagttttgggattattgcttc |
37930165 |
T |
|
| Q |
408 |
agggcagaaaagaggaagcatgggaaagtcatttgcaaaagctcgaaaagcttccccatgatgaaattttcagtgcgttcaagttgagttatgatggact |
507 |
Q |
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||||||| | || |||||||||||||| | ||||||||||||||||||||||| || | ||| ||||| | ||| ||||| |||||||||| ||| |
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| T |
37930166 |
ttggcagaacaaagaaagcatgggaaagtgagttgcaaaagctcgaaaagcttcctgatcttaaaactttcaaagtgttgaagttaagttatgatgaact |
37930265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 66 - 311
Target Start/End: Complemental strand, 44644572 - 44644330
Alignment:
| Q |
66 |
tttcatttgatccaaggctcaaacggacaaagattctccttgttcttgatgatgtgaaagattctgatcaacttgaagatttaattggaacacatcatag |
165 |
Q |
| |
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|||||||||||| |||||||||| |||| ||| ||||||||||||||||||||| || |||| ||||||||| |||||||||||||| | | ||| |
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| T |
44644572 |
tttcatttgatcaaaggctcaaatggactaaggctctccttgttcttgatgatgttaacaattcggatcaacttagagatttaattggaa---agcttag |
44644476 |
T |
|
| Q |
166 |
taactttggccaagggagtataatcattgtgactaacagagacaagcaagtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggt |
265 |
Q |
| |
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||| |||| | ||| |||| |||||||||||||| |||||||| ||| || || ||||||| ||| ||||||| ||||||| |||| || |||||| | |
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| T |
44644475 |
taagtttgcaccaggtagtagaatcattgtgactagcagagacatgcaggtactgaagaatgtcaaagctgatggaatatatgaagtcaaggagatgaat |
44644376 |
T |
|
| Q |
266 |
tctcaagattctctaaaactcttctgttcatttgcttttaaacaaa |
311 |
Q |
| |
|
| ||| || |||||| ||||||||||| | ||| |||||||||| |
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| T |
44644375 |
tttcatgaatctctacgactcttctgtttaaatgcctttaaacaaa |
44644330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 166 - 333
Target Start/End: Original strand, 25721504 - 25721671
Alignment:
| Q |
166 |
taactttggccaagggagtataatcattgtgactaacagagacaagcaagtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggt |
265 |
Q |
| |
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|||||||||||| || |||| ||||||| |||||| |||||||| || ||||| ||||||| || | | ||||||||||| |||| || |||||| || |
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| T |
25721504 |
taactttggccagggtagtagaatcattatgactagtagagacaaacatgtgcttaagaatgccatttcagatgaaatatacgaagtcaaggagatgtgt |
25721603 |
T |
|
| Q |
266 |
tctcaagattctctaaaactcttctgttcatttgcttttaaacaaaaccatccaatagaaccttatgt |
333 |
Q |
| |
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| ||||||||| || |||||||| ||| | ||| |||||||||||| |||| ||| || ||||||| |
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| T |
25721604 |
tttcaagattcagtacaactcttcagtttaaatgcctttaaacaaaactatcctataaaagcttatgt |
25721671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 285
Target Start/End: Original strand, 19869225 - 19869328
Alignment:
| Q |
182 |
agtataatcattgtgactaacagagacaagcaagtgctcaagaatggcaatgctgatgaaatatataaagtaaatgagatgggttctcaagattctctaa |
281 |
Q |
| |
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|||| |||||||||||||| ||||||| |||||| || |||||| ||||||||||||||||| |||| ||||||||| || ||||||||||||| |
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| T |
19869225 |
agtagaatcattgtgactagtagagacatgcaagtacttaagaatatagatgctgatgaaatatatgaagtgaatgagatgaattttcaagattctctac |
19869324 |
T |
|
| Q |
282 |
aact |
285 |
Q |
| |
|
|||| |
|
|
| T |
19869325 |
aact |
19869328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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