View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7618_low_9 (Length: 526)
Name: NF7618_low_9
Description: NF7618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7618_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 166 - 485
Target Start/End: Complemental strand, 2736423 - 2736107
Alignment:
| Q |
166 |
tttgaaggtgattattaacttattattatacctgaaaggagaagcaactttgttatcaaaatcagaaagagcgagaccaacatatttatcaccgacatct |
265 |
Q |
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| T |
2736423 |
tttgaaggtgattattaacttattat---acctgaaaggagaagcaactttgttatcaaaatcagaaagagcgagaccaacatatttatcaccgacatct |
2736327 |
T |
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| Q |
266 |
aaacccatcaaccttccacgttcgttctttgttgttttgaccaaatcgtgaaacaactccaacggcttcatctgcctcatttcctctatctagttaattt |
365 |
Q |
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| T |
2736326 |
aaacccatcaaccttccacgttcgttctttgttgttttgaccaaatcgtgaaacaactccaacggcttcatctgcctcatttcctctatctaattaattt |
2736227 |
T |
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| Q |
366 |
gagtaaggttagggttttcatcaattttcaagttgaagctaaaaatggaaaatattggaggagagaaaacaaacctgttatggtggtagacggtggcaca |
465 |
Q |
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| T |
2736226 |
gagtaaggttagggttttcatcaatttccaagttgaagctaaaaatggaaaatattggaggagagaaaacaaacctgttatggtggtagacggtggcaca |
2736127 |
T |
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| Q |
466 |
gagaggagatcagtgttttg |
485 |
Q |
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| T |
2736126 |
gataggagatcagtgttttg |
2736107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 6 - 191
Target Start/End: Complemental strand, 2736612 - 2736427
Alignment:
| Q |
6 |
actgaaatgaaaggagaaacatgtctacaaagagttgaatagcatgatagtgaataaccaaccacaaatcaatagattccatgaaacaacatctctataa |
105 |
Q |
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| T |
2736612 |
actgaaatgaaaggagaaacatgtctacaaagagttgaatagcatgatagtgaataaccaaccacaaatcaatagattccatgaaacaacatctctataa |
2736513 |
T |
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| Q |
106 |
gacatttgatcaaacaggttgcgtgcatgagaggtataaccaagtttcatgaaaattgaatttgaaggtgattattaacttattat |
191 |
Q |
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| T |
2736512 |
gacatttgatcaaacaggttgcgtgcatgagaggtaaaaccaagtttcatgaaaattgattttgaaggtgattattaacatattat |
2736427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 7e-35; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 65 - 156
Target Start/End: Original strand, 46826287 - 46826378
Alignment:
| Q |
65 |
aaccacaaatcaatagattccatgaaacaacatctctataagacatttgatcaaacaggttgcgtgcatgagaggtataaccaagtttcatg |
156 |
Q |
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| T |
46826287 |
aaccacaaatcaatacattccatgaaacaacgtctctataagacatttgatcaaacatgttgcgtgcatgagaggtaaaaccaagtttcatg |
46826378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 54
Target Start/End: Original strand, 46826235 - 46826266
Alignment:
| Q |
23 |
aacatgtctacaaagagttgaatagcatgata |
54 |
Q |
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| T |
46826235 |
aacatgtctacaaagagttgaatagcatgata |
46826266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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