View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7619_high_1 (Length: 569)

Name: NF7619_high_1
Description: NF7619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7619_high_1
NF7619_high_1
[»] chr1 (8 HSPs)
chr1 (253-569)||(8774763-8775079)
chr1 (19-99)||(8774190-8774270)
chr1 (311-521)||(8781015-8781229)
chr1 (495-568)||(8764285-8764356)
chr1 (152-208)||(8774637-8774696)
chr1 (312-388)||(8786726-8786802)
chr1 (61-93)||(11615280-11615312)
chr1 (279-307)||(35218055-35218083)
[»] chr2 (8 HSPs)
chr2 (344-569)||(2542561-2542780)
chr2 (253-307)||(34904007-34904061)
chr2 (279-317)||(35954448-35954486)
chr2 (535-568)||(3516284-3516317)
chr2 (279-307)||(2136799-2136827)
chr2 (279-307)||(24490696-24490724)
chr2 (279-315)||(27694415-27694451)
chr2 (254-306)||(29242680-29242732)
[»] scaffold0233 (1 HSPs)
scaffold0233 (254-310)||(17042-17098)
[»] chr4 (4 HSPs)
chr4 (258-309)||(40390884-40390935)
chr4 (62-96)||(31050115-31050149)
chr4 (254-307)||(15882250-15882303)
chr4 (284-316)||(46472443-46472475)
[»] chr5 (3 HSPs)
chr5 (254-304)||(26724110-26724160)
chr5 (254-307)||(35529776-35529829)
chr5 (253-307)||(15069927-15069981)
[»] chr8 (8 HSPs)
chr8 (254-307)||(26938775-26938828)
chr8 (284-319)||(43536259-43536294)
chr8 (254-307)||(17153534-17153587)
chr8 (254-307)||(24292299-24292352)
chr8 (254-307)||(26938537-26938590)
chr8 (279-307)||(2415095-2415123)
chr8 (279-307)||(17157121-17157149)
chr8 (279-319)||(42950266-42950306)
[»] scaffold0627 (1 HSPs)
scaffold0627 (279-319)||(6804-6844)
[»] chr6 (2 HSPs)
chr6 (279-318)||(10516713-10516752)
chr6 (256-307)||(25042954-25043005)
[»] chr3 (7 HSPs)
chr3 (256-307)||(20336777-20336828)
chr3 (254-315)||(39340758-39340820)
chr3 (254-307)||(52423006-52423057)
chr3 (284-317)||(51419533-51419566)
chr3 (254-307)||(52423201-52423254)
chr3 (279-307)||(20337008-20337036)
chr3 (279-307)||(45857589-45857617)
[»] scaffold0478 (1 HSPs)
scaffold0478 (279-307)||(3218-3246)
[»] scaffold0020 (1 HSPs)
scaffold0020 (279-307)||(152079-152107)
[»] chr7 (1 HSPs)
chr7 (279-307)||(28545262-28545290)


Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 253 - 569
Target Start/End: Original strand, 8774763 - 8775079
Alignment:
Q  253 cagggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacctttattttttatccaatgtttttccacatgttgtagcaattgttt 352  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8774763 cagggactaaacatgaaatctcgtgattttgtagggactaaaaacatatttaacctttattttttatccaatgtttttccacatgttgtagcaattgttt 8774862  T
Q  353 cccttttgttcctcaaaacatagttttcatcattcaaacacgttgtaaatatcttgtaggactgtgtatgagtacagtcaaagagtgatttaaatttgtg 452  Q
    ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8774863 cccttttgttcctgaaaacgtagttttcatcattcaaacacgttgtaaatatcttgtaggactgtgtatgagtacagtcaaagagtgatttaaatttgtg 8774962  T
Q  453 gatgaatattttccttaacatatcaattgtaagtttgtaacactaaaattgactgtttctctgttttttgttaatgcttacagtgagtttttctttcccc 552  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8774963 gatgaatattttccttaacatatcaattgtaagtttgtaacactaaaattgactgtttctctgttttttgttaatgcttacagtgagtttttctttcccc 8775062  T
Q  553 tttcaaaggaggatatt 569  Q
    |||||||||||||||||    
T  8775063 tttcaaaggaggatatt 8775079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 19 - 99
Target Start/End: Original strand, 8774190 - 8774270
Alignment:
Q  19 catgcacgccctgatttgggtctattgacttatttgagcttacagggttaaatatgtttttaatccctggaaaatcacgag 99  Q
    ||||||| ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  8774190 catgcacaccctgatttgggtttattgacttatttgagcttatagggttaaatatgtttttaatccccggaaaatcacgag 8774270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 311 - 521
Target Start/End: Original strand, 8781015 - 8781229
Alignment:
Q  311 attttttatccaatgtttttccacatgttgtagcaattgtttcccttttgttcctcaaaacatagttttcatcattcaaacacgtt--gtaaatatcttg 408  Q
    |||||| |||||||||||||| ||||||| ||  | ||||| |||||||||||||||||||||||||||||| ||||| ||  |||  |  ||||||| |    
T  8781015 atttttcatccaatgtttttcgacatgttctaa-atttgttgcccttttgttcctcaaaacatagttttcatgattcagacttgttaggataatatctcg 8781113  T
Q  409 taggactg----tgtatgagtacagtcaaagagtgatttaaatttgtggatgaatattttccttaacatatcaattgtaagtttgtaacactaaaattga 504  Q
    ||||| ||    ||||||| |||| | || ||||| ||||||||||| ||| ||||| |||||||| | ||||  | | |  ||||||||||||||||||    
T  8781114 taggattgtgtatgtatgaatacaataaatgagtgctttaaatttgtagataaatatattccttaagacatcagatatca-attgtaacactaaaattga 8781212  T
Q  505 ctgtttctctgtttttt 521  Q
     ||||||||| ||||||    
T  8781213 ttgtttctctctttttt 8781229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 495 - 568
Target Start/End: Original strand, 8764285 - 8764356
Alignment:
Q  495 ctaaaattgactgtttctctgttttttgttaatgcttacagtgagtttttctttcccctttcaaaggaggatat 568  Q
    ||||||||||||||||||  ||||||| |||||| || ||||||||||||||||||||| ||||||||||||||    
T  8764285 ctaaaattgactgtttct--gttttttattaatgttttcagtgagtttttctttcccctctcaaaggaggatat 8764356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 208
Target Start/End: Original strand, 8774637 - 8774696
Alignment:
Q  152 tgatattgcagtttgtaagaataatc---ctttttcaaaatagtcattacaaaaaatgga 208  Q
    ||||||||||||||||||||||||||   |||||||||||||||||| ||||||||||||    
T  8774637 tgatattgcagtttgtaagaataatccttctttttcaaaatagtcatcacaaaaaatgga 8774696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 312 - 388
Target Start/End: Original strand, 8786726 - 8786802
Alignment:
Q  312 ttttttatccaatgtttttccacatgttgtagcaattgtttcccttttgttcctcaaaacatagttttcatcattca 388  Q
    ||||| ||||||||||||||||||  |||||| ||||  | |||||||||||| |  |||||||||||||| |||||    
T  8786726 tttttcatccaatgtttttccacagattgtagaaattaatgcccttttgttcccctgaacatagttttcatgattca 8786802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 11615280 - 11615312
Alignment:
Q  61 cagggttaaatatgtttttaatccctggaaaat 93  Q
    ||||||||||||||||||||||||||| |||||    
T  11615280 cagggttaaatatgtttttaatccctgtaaaat 11615312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 307
Target Start/End: Complemental strand, 35218083 - 35218055
Alignment:
Q  279 ttttgtagggactaaaaacatatttaacc 307  Q
    |||||||||||||||||||||||||||||    
T  35218083 ttttgtagggactaaaaacatatttaacc 35218055  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 344 - 569
Target Start/End: Complemental strand, 2542780 - 2542561
Alignment:
Q  344 caattgtttcccttttgttcctcaaaacatagttttcatcattcaaacacgttgta--aatatcttgtaggactgtgtatgagtacagtcaaagagtgat 441  Q
    |||||||| | |||||||||||||||| |||||| |||| ||||| ||  ||| ||  |||||||||| ||| ||||||||| | | ||||| ||||| |    
T  2542780 caattgttgctcttttgttcctcaaaatatagttgtcatgattcagacgtgttttacaaatatcttgtgggattgtgtatgaatgccgtcaatgagtgct 2542681  T
Q  442 ttaaatttgtggatgaatattttccttaacatatcaattgtaagtttgtaacactaaaattgactgtttctctgt-tttttgttaatgcttacagtgagt 540  Q
    |||| ||||| ||| |||||||||||||| ||| |||        |||| ||  ||||||||||||||||    | |||||||||||| ||||||||||     
T  2542680 ttaattttgtagataaatattttccttaagataccaa--------ttgtgaccttaaaattgactgtttcaaaatatttttgttaatgtttacagtgag- 2542590  T
Q  541 ttttctttcccctttcaaaggaggatatt 569  Q
    ||||||||||| |||||||||||||||||    
T  2542589 ttttctttcccatttcaaaggaggatatt 2542561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 34904061 - 34904007
Alignment:
Q  253 cagggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 307  Q
    |||||||||||| | ||| || ||| |||||||||||||||||||||||||||||    
T  34904061 cagggactaaacttaaaaacttgtgattttgtagggactaaaaacatatttaacc 34904007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 279 - 317
Target Start/End: Original strand, 35954448 - 35954486
Alignment:
Q  279 ttttgtagggactaaaaacatatttaacctttatttttt 317  Q
    ||||||||||||||||||||||||||||| ||| |||||    
T  35954448 ttttgtagggactaaaaacatatttaacccttaattttt 35954486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 535 - 568
Target Start/End: Complemental strand, 3516317 - 3516284
Alignment:
Q  535 gtgagtttttctttcccctttcaaaggaggatat 568  Q
    ||||||||||||||||||||||||| ||||||||    
T  3516317 gtgagtttttctttcccctttcaaaagaggatat 3516284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 307
Target Start/End: Original strand, 2136799 - 2136827
Alignment:
Q  279 ttttgtagggactaaaaacatatttaacc 307  Q
    |||||||||||||||||||||||||||||    
T  2136799 ttttgtagggactaaaaacatatttaacc 2136827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 307
Target Start/End: Original strand, 24490696 - 24490724
Alignment:
Q  279 ttttgtagggactaaaaacatatttaacc 307  Q
    |||||||||||||||||||||||||||||    
T  24490696 ttttgtagggactaaaaacatatttaacc 24490724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 315
Target Start/End: Complemental strand, 27694451 - 27694415
Alignment:
Q  279 ttttgtagggactaaaaacatatttaacctttatttt 315  Q
    |||| ||||||||||||||||||||||||||| ||||    
T  27694451 ttttatagggactaaaaacatatttaacctttttttt 27694415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 254 - 306
Target Start/End: Original strand, 29242680 - 29242732
Alignment:
Q  254 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaac 306  Q
    ||||||||||| ||||| ||| |  ||||||||||||||||||| ||||||||    
T  29242680 agggactaaacttgaaaactcctaattttgtagggactaaaaacgtatttaac 29242732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0233 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0233
Description:

Target: scaffold0233; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 310
Target Start/End: Original strand, 17042 - 17098
Alignment:
Q  254 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaaccttt 310  Q
    ||||| ||||| ||||| |||||| |||| |||||||||||||||||||||||||||    
T  17042 agggattaaacctgaaaactcgtgattttatagggactaaaaacatatttaaccttt 17098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 258 - 309
Target Start/End: Complemental strand, 40390935 - 40390884
Alignment:
Q  258 actaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacctt 309  Q
    ||||||| ||||| ||| || |||||||||||||||||||||||||||||||    
T  40390935 actaaacttgaaaactcatgattttgtagggactaaaaacatatttaacctt 40390884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 62 - 96
Target Start/End: Complemental strand, 31050149 - 31050115
Alignment:
Q  62 agggttaaatatgtttttaatccctggaaaatcac 96  Q
    |||||||||||||||||||||||||| ||||||||    
T  31050149 agggttaaatatgtttttaatccctgcaaaatcac 31050115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 15882250 - 15882303
Alignment:
Q  254 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 307  Q
    ||||||||| | | ||| ||| || |||||||||||||||||||||||||||||    
T  15882250 agggactaagcttaaaaactcatgattttgtagggactaaaaacatatttaacc 15882303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 284 - 316
Target Start/End: Original strand, 46472443 - 46472475
Alignment:
Q  284 tagggactaaaaacatatttaacctttattttt 316  Q
    |||||||||||||||||||||||| ||||||||    
T  46472443 tagggactaaaaacatatttaaccattattttt 46472475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 254 - 304
Target Start/End: Complemental strand, 26724160 - 26724110
Alignment:
Q  254 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatattta 304  Q
    |||||||||||  |||| |||||| ||||||||||||||||||||||||||    
T  26724160 agggactaaactcgaaaactcgtgattttgtagggactaaaaacatattta 26724110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 35529776 - 35529829
Alignment:
Q  254 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 307  Q
    ||||||||||| |||||  ||||| |||| ||||||||||||||||||||||||    
T  35529776 agggactaaacttgaaacgtcgtgattttatagggactaaaaacatatttaacc 35529829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 253 - 307
Target Start/End: Complemental strand, 15069981 - 15069927
Alignment:
Q  253 cagggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 307  Q
    |||||||||||||| ||| ||| || ||||||||||  |||||||||||||||||    
T  15069981 cagggactaaacataaaaactcatgattttgtagggcataaaaacatatttaacc 15069927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000008; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 26938828 - 26938775
Alignment:
Q  254 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 307  Q
    ||||||||||||| ||| || ||  |||||||||||||||||||||||||||||    
T  26938828 agggactaaacataaaagcttgtaattttgtagggactaaaaacatatttaacc 26938775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 284 - 319
Target Start/End: Original strand, 43536259 - 43536294
Alignment:
Q  284 tagggactaaaaacatatttaacctttattttttat 319  Q
    |||||||||||||||||||||||| |||||||||||    
T  43536259 tagggactaaaaacatatttaacccttattttttat 43536294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 17153587 - 17153534
Alignment:
Q  254 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 307  Q
    ||||||||| | | ||| ||| || |||||||||||||||||||||||||||||    
T  17153587 agggactaagcttaaaaactcatgattttgtagggactaaaaacatatttaacc 17153534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 24292299 - 24292352
Alignment:
Q  254 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 307  Q
    ||||||||||| ||||| || ||| |||| ||||||||||||||| ||||||||    
T  24292299 agggactaaacttgaaagcttgtgattttttagggactaaaaacacatttaacc 24292352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 26938590 - 26938537
Alignment:
Q  254 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 307  Q
    ||||||||||| | ||| || ||  |||||||||||||||||||||||||||||    
T  26938590 agggactaaacttaaaagcttgtaattttgtagggactaaaaacatatttaacc 26938537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 307
Target Start/End: Original strand, 2415095 - 2415123
Alignment:
Q  279 ttttgtagggactaaaaacatatttaacc 307  Q
    |||||||||||||||||||||||||||||    
T  2415095 ttttgtagggactaaaaacatatttaacc 2415123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 307
Target Start/End: Original strand, 17157121 - 17157149
Alignment:
Q  279 ttttgtagggactaaaaacatatttaacc 307  Q
    |||||||||||||||||||||||||||||    
T  17157121 ttttgtagggactaaaaacatatttaacc 17157149  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 319
Target Start/End: Original strand, 42950266 - 42950306
Alignment:
Q  279 ttttgtagggactaaaaacatatttaacctttattttttat 319  Q
    |||| ||||||| ||||||||||||||||||| ||||||||    
T  42950266 ttttatagggaccaaaaacatatttaaccttttttttttat 42950306  T

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Target: scaffold0627 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0627
Description:

Target: scaffold0627; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 279 - 319
Target Start/End: Complemental strand, 6844 - 6804
Alignment:
Q  279 ttttgtagggactaaaaacatatttaacctttattttttat 319  Q
    |||| ||||||||||||| ||||||||||||||||||||||    
T  6844 ttttatagggactaaaaatatatttaacctttattttttat 6804  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 279 - 318
Target Start/End: Original strand, 10516713 - 10516752
Alignment:
Q  279 ttttgtagggactaaaaacatatttaacctttatttttta 318  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  10516713 ttttgtagggactaaaaacatatttaaccaatatttttta 10516752  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 307
Target Start/End: Original strand, 25042954 - 25043005
Alignment:
Q  256 ggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 307  Q
    ||||||||  ||||| ||| || |||||||||||||||||||||||||||||    
T  25042954 ggactaaatttgaaaactcatgattttgtagggactaaaaacatatttaacc 25043005  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 307
Target Start/End: Complemental strand, 20336828 - 20336777
Alignment:
Q  256 ggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 307  Q
    ||||||||  ||||| ||| || |||||||||||||||||||||||||||||    
T  20336828 ggactaaagttgaaaactcttgattttgtagggactaaaaacatatttaacc 20336777  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 39340820 - 39340758
Alignment:
Q  254 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaa-cctttatttt 315  Q
    ||||||||||| | ||| || ||| ||||||||||||| ||||||||||||| ||||||||||    
T  39340820 agggactaaacttaaaaactagtgattttgtagggactcaaaacatatttaaccctttatttt 39340758  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 254 - 307
Target Start/End: Complemental strand, 52423057 - 52423006
Alignment:
Q  254 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 307  Q
    ||||||||||| ||||| |||||| |||||||||||||  ||||||||||||||    
T  52423057 agggactaaacttgaaaactcgtgattttgtagggact--aaacatatttaacc 52423006  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 284 - 317
Target Start/End: Complemental strand, 51419566 - 51419533
Alignment:
Q  284 tagggactaaaaacatatttaacctttatttttt 317  Q
    |||||||||||||||||||||||| |||||||||    
T  51419566 tagggactaaaaacatatttaacccttatttttt 51419533  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 254 - 307
Target Start/End: Original strand, 52423201 - 52423254
Alignment:
Q  254 agggactaaacatgaaatctcgtggttttgtagggactaaaaacatatttaacc 307  Q
    ||||| ||||||||||| ||  |  |||||||||||||||||||||||||||||    
T  52423201 agggattaaacatgaaaacttataattttgtagggactaaaaacatatttaacc 52423254  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 307
Target Start/End: Original strand, 20337008 - 20337036
Alignment:
Q  279 ttttgtagggactaaaaacatatttaacc 307  Q
    |||||||||||||||||||||||||||||    
T  20337008 ttttgtagggactaaaaacatatttaacc 20337036  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 307
Target Start/End: Complemental strand, 45857617 - 45857589
Alignment:
Q  279 ttttgtagggactaaaaacatatttaacc 307  Q
    |||||||||||||||||||||||||||||    
T  45857617 ttttgtagggactaaaaacatatttaacc 45857589  T

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Target: scaffold0478 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0478
Description:

Target: scaffold0478; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 307
Target Start/End: Complemental strand, 3246 - 3218
Alignment:
Q  279 ttttgtagggactaaaaacatatttaacc 307  Q
    |||||||||||||||||||||||||||||    
T  3246 ttttgtagggactaaaaacatatttaacc 3218  T

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Target: scaffold0020 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 307
Target Start/End: Complemental strand, 152107 - 152079
Alignment:
Q  279 ttttgtagggactaaaaacatatttaacc 307  Q
    |||||||||||||||||||||||||||||    
T  152107 ttttgtagggactaaaaacatatttaacc 152079  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 279 - 307
Target Start/End: Original strand, 28545262 - 28545290
Alignment:
Q  279 ttttgtagggactaaaaacatatttaacc 307  Q
    |||||||||||||||||||||||||||||    
T  28545262 ttttgtagggactaaaaacatatttaacc 28545290  T

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