View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7619_high_10 (Length: 232)

Name: NF7619_high_10
Description: NF7619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7619_high_10
NF7619_high_10
[»] chr4 (3 HSPs)
chr4 (21-214)||(39929856-39930052)
chr4 (135-214)||(36734789-36734868)
chr4 (146-188)||(51555988-51556030)
[»] chr2 (8 HSPs)
chr2 (135-214)||(4550673-4550752)
chr2 (137-198)||(11393766-11393827)
chr2 (137-198)||(11410427-11410488)
chr2 (154-198)||(2400071-2400115)
chr2 (171-214)||(27288565-27288608)
chr2 (161-214)||(40672891-40672944)
chr2 (135-187)||(17221662-17221714)
chr2 (146-198)||(33197350-33197402)
[»] chr7 (3 HSPs)
chr7 (147-212)||(22388001-22388066)
chr7 (135-188)||(32714317-32714371)
chr7 (162-198)||(991993-992029)
[»] scaffold0590 (1 HSPs)
scaffold0590 (135-214)||(1169-1248)
[»] scaffold0275 (1 HSPs)
scaffold0275 (135-214)||(2727-2806)
[»] scaffold0100 (1 HSPs)
scaffold0100 (135-214)||(42513-42592)
[»] chr8 (5 HSPs)
chr8 (147-198)||(34563158-34563209)
chr8 (147-214)||(4558706-4558773)
chr8 (171-214)||(11188250-11188293)
chr8 (147-188)||(12972764-12972805)
chr8 (162-198)||(29170051-29170087)
[»] chr5 (5 HSPs)
chr5 (147-214)||(29115308-29115375)
chr5 (133-198)||(14716581-14716646)
chr5 (171-214)||(40048375-40048418)
chr5 (147-188)||(2569823-2569864)
chr5 (134-187)||(11473197-11473250)
[»] chr3 (6 HSPs)
chr3 (133-214)||(2304336-2304418)
chr3 (154-195)||(46759168-46759209)
chr3 (146-214)||(21862271-21862339)
chr3 (147-190)||(39971227-39971270)
chr3 (148-214)||(16790183-16790249)
chr3 (160-214)||(32703059-32703113)
[»] chr6 (3 HSPs)
chr6 (163-214)||(2514626-2514677)
chr6 (147-188)||(1497888-1497929)
chr6 (162-214)||(4325403-4325455)
[»] chr1 (2 HSPs)
chr1 (133-214)||(49557035-49557116)
chr1 (166-194)||(51256882-51256910)


Alignment Details
Target: chr4 (Bit Score: 120; Significance: 2e-61; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 21 - 214
Target Start/End: Complemental strand, 39930052 - 39929856
Alignment:
Q  21 aagatgtggaaataattcatgtatgacttcaggtcagttttgaaatttaaagcttaagtttgacatgtttcttaacatagaccttgtttggat---nnnn 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||           
T  39930052 aagatgtggaaataattcatgtatgacttcaggtcagttttgaaatttacagcttaagtttgacatgtttcttgacatagaccttgtttggataaaaaaa 39929953  T
Q  118 nnnnnnnnnnnnngaagcttaattaacaacttataacataaacatttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39929952 aaaaaaaaaaaaaaaagcttaattaacaacttataacataaacatttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 39929856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 36734789 - 36734868
Alignment:
Q  135 cttaattaacaacttataacataaacatttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    ||||||||| | ||||||||||| || |||||||| |||||||||||||||||  | ||||||| | |||||||||||||    
T  36734789 cttaattaaaagcttataacatatacctttatcatataagtgcttatgtataatctctttctataacaaaaggtaaaata 36734868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 51556030 - 51555988
Alignment:
Q  146 acttataacataaacatttatcatttaagtgcttatgtataag 188  Q
    ||||||||||||| |||||||||| ||||||||||||||||||    
T  51556030 acttataacataaccatttatcatataagtgcttatgtataag 51555988  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 4550673 - 4550752
Alignment:
Q  135 cttaattaacaacttataacataaacatttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    |||||||||||||||||| ||||| |  ||||||  ||||||||||||||||||||||||| || ||||||| |||||||    
T  4550673 cttaattaacaacttatagcataatctcttatcacataagtgcttatgtataagttgtttccataataaaagataaaata 4550752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 11393827 - 11393766
Alignment:
Q  137 taattaacaacttataacataaacatttatcatttaagtgcttatgtataagttgtttctat 198  Q
    |||||||  ||||||| ||||||||||||||||||||||||||||||||||| | |||||||    
T  11393827 taattaagcacttatagcataaacatttatcatttaagtgcttatgtataagctatttctat 11393766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 137 - 198
Target Start/End: Complemental strand, 11410488 - 11410427
Alignment:
Q  137 taattaacaacttataacataaacatttatcatttaagtgcttatgtataagttgtttctat 198  Q
    |||||||  ||||||| ||||||||||||||||||||||||||||||||||| | |||||||    
T  11410488 taattaagcacttatagcataaacatttatcatttaagtgcttatgtataagctatttctat 11410427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 154 - 198
Target Start/End: Original strand, 2400071 - 2400115
Alignment:
Q  154 cataaacatttatcatttaagtgcttatgtataagttgtttctat 198  Q
    |||||||| ||||||| ||||||||||||||||||||||||||||    
T  2400071 cataaacaattatcatataagtgcttatgtataagttgtttctat 2400115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 214
Target Start/End: Original strand, 27288565 - 27288608
Alignment:
Q  171 taagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    |||||||||||||| ||||||||||||| ||||||| |||||||    
T  27288565 taagtgcttatgtaaaagttgtttctataataaaagataaaata 27288608  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 214
Target Start/End: Complemental strand, 40672944 - 40672891
Alignment:
Q  161 atttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    |||||||||||||||  ||||||||||||| ||||||| | ||||| |||||||    
T  40672944 atttatcatttaagtttttatgtataagttatttctatgaaaaaagataaaata 40672891  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 187
Target Start/End: Complemental strand, 17221714 - 17221662
Alignment:
Q  135 cttaattaacaacttataacataaacatttatcatttaagtgcttatgtataa 187  Q
    |||||||||  ||||||| ||||| | ||||||||||||||| ||||||||||    
T  17221714 cttaattaagcacttatagcataagcctttatcatttaagtgtttatgtataa 17221662  T

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Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Complemental strand, 33197402 - 33197350
Alignment:
Q  146 acttataacataaacatttatcatttaagtgcttatgtataagttgtttctat 198  Q
    |||||||||||||||  ||||||| ||||||||||| |||||| | |||||||    
T  33197402 acttataacataaacgcttatcatataagtgcttatctataagctatttctat 33197350  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 22388066 - 22388001
Alignment:
Q  147 cttataacataaacatttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaa 212  Q
    ||||||||||||||| |||||||||||||||||||| ||||| | ||||||| | ||||| |||||    
T  22388066 cttataacataaacacttatcatttaagtgcttatggataagctatttctataacaaaagataaaa 22388001  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 32714317 - 32714371
Alignment:
Q  135 cttaattaacaacttataacataaacatttatcat-ttaagtgcttatgtataag 188  Q
    ||||||| ||||||||||| |||||||||||||||  |||| |||||||||||||    
T  32714317 cttaatttacaacttataatataaacatttatcatgataagcgcttatgtataag 32714371  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Original strand, 991993 - 992029
Alignment:
Q  162 tttatcatttaagtgcttatgtataagttgtttctat 198  Q
    |||||||| |||||||||| |||||||||||||||||    
T  991993 tttatcatataagtgcttacgtataagttgtttctat 992029  T

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Target: scaffold0590 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0590
Description:

Target: scaffold0590; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 214
Target Start/End: Complemental strand, 1248 - 1169
Alignment:
Q  135 cttaattaacaacttataacataaacatttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    |||||||||  ||||||| ||||||| | |||||| |||||||||||||||||| | ||||||| | ||||| |||||||    
T  1248 cttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaata 1169  T

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Target: scaffold0275 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0275
Description:

Target: scaffold0275; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 2727 - 2806
Alignment:
Q  135 cttaattaacaacttataacataaacatttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    |||||||||  ||||||| ||||||| | |||||| |||||||||||||||||| | ||||||| | ||||| |||||||    
T  2727 cttaattaagtacttatagcataaacgtctatcatataagtgcttatgtataagctatttctataacaaaagataaaata 2806  T

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Target: scaffold0100 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 214
Target Start/End: Original strand, 42513 - 42592
Alignment:
Q  135 cttaattaacaacttataacataaacatttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    |||||||||  ||||||| || | ||||||||||| |||||||||||||||||||  ||||||| | ||||| |||||||    
T  42513 cttaattaaacacttatagcagacacatttatcatataagtgcttatgtataagtcatttctataacaaaagataaaata 42592  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Original strand, 34563158 - 34563209
Alignment:
Q  147 cttataacataaacatttatcatttaagtgcttatgtataagttgtttctat 198  Q
    |||||| |||||||||||||||| ||||||||||| |||||||| |||||||    
T  34563158 cttatagcataaacatttatcatataagtgcttatatataagttatttctat 34563209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 214
Target Start/End: Original strand, 4558706 - 4558773
Alignment:
Q  147 cttataacataaacatttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    |||||| ||||||| ||||| || |||||| ||||||||||| | ||||||| ||||||| |||||||    
T  4558706 cttatagcataaacgtttattatgtaagtgtttatgtataagctatttctataataaaagataaaata 4558773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 11188293 - 11188250
Alignment:
Q  171 taagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    |||||||||||||||||||||||||||| | ||||| |||||||    
T  11188293 taagtgcttatgtataagttgtttctataacaaaagataaaata 11188250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 12972764 - 12972805
Alignment:
Q  147 cttataacataaacatttatcatttaagtgcttatgtataag 188  Q
    |||||| ||||| |||||||||| ||||||||||||||||||    
T  12972764 cttatagcataagcatttatcatataagtgcttatgtataag 12972805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 198
Target Start/End: Complemental strand, 29170087 - 29170051
Alignment:
Q  162 tttatcatttaagtgcttatgtataagttgtttctat 198  Q
    |||||||| |||||||||||||||||||| |||||||    
T  29170087 tttatcatataagtgcttatgtataagttctttctat 29170051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 29115375 - 29115308
Alignment:
Q  147 cttataacataaacatttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    |||||| ||||||||||||||||  ||||||||||||||||| | ||||||  | |||||||||||||    
T  29115375 cttatagcataaacatttatcataaaagtgcttatgtataagctatttctacaacaaaaggtaaaata 29115308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 133 - 198
Target Start/End: Complemental strand, 14716646 - 14716581
Alignment:
Q  133 agcttaattaacaacttataacataaacatttatcatttaagtgcttatgtataagttgtttctat 198  Q
    |||||||||||   |||||| |||||  |||| |||| ||||||||||||||||||||||||||||    
T  14716646 agcttaattaagtgcttatagcataaggatttgtcatataagtgcttatgtataagttgtttctat 14716581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 214
Target Start/End: Complemental strand, 40048418 - 40048375
Alignment:
Q  171 taagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    |||||||||||||||||||||||||||| | ||||| |||||||    
T  40048418 taagtgcttatgtataagttgtttctataacaaaagataaaata 40048375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Complemental strand, 2569864 - 2569823
Alignment:
Q  147 cttataacataaacatttatcatttaagtgcttatgtataag 188  Q
    |||||| | |||||||||||||| ||||||||||||||||||    
T  2569864 cttataccgtaaacatttatcatataagtgcttatgtataag 2569823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 187
Target Start/End: Complemental strand, 11473250 - 11473197
Alignment:
Q  134 gcttaattaacaacttataacataaacatttatcatttaagtgcttatgtataa 187  Q
    |||||||||||| ||| || ||||||  |||||||||||||||| |||||||||    
T  11473250 gcttaattaacatcttgtagcataaatgtttatcatttaagtgcgtatgtataa 11473197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 133 - 214
Target Start/End: Complemental strand, 2304418 - 2304336
Alignment:
Q  133 agcttaattaacaacttataacataaacatttatcatt-taagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    ||||||||| ||||||||||||| || |||| |||||  |||||| ||||||||||| | ||||||| ||||||| |||||||    
T  2304418 agcttaatttacaacttataacacaagcattcatcatgataagtgattatgtataagctatttctataataaaagataaaata 2304336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 154 - 195
Target Start/End: Complemental strand, 46759209 - 46759168
Alignment:
Q  154 cataaacatttatcatttaagtgcttatgtataagttgtttc 195  Q
    |||||||| |||||||||||||||||||||||||| ||||||    
T  46759209 cataaacacttatcatttaagtgcttatgtataaggtgtttc 46759168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 146 - 214
Target Start/End: Complemental strand, 21862339 - 21862271
Alignment:
Q  146 acttataacataaacatttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    ||||||| ||||||| |||||| | |||||||||  ||||||| ||||||||||| ||||| |||||||    
T  21862339 acttatagcataaacgtttatcttataagtgcttgcgtataagctgtttctattacaaaagataaaata 21862271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 190
Target Start/End: Original strand, 39971227 - 39971270
Alignment:
Q  147 cttataacataaacatttatcatttaagtgcttatgtataagtt 190  Q
    |||||||||| |||| ||||||| ||||||||||||||||||||    
T  39971227 cttataacatcaacacttatcatataagtgcttatgtataagtt 39971270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 16790249 - 16790183
Alignment:
Q  148 ttataacataaacatttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    ||||| ||||| | |||||||| ||||||||||| |||||||| ||||||| | ||||| |||||||    
T  16790249 ttatagcataagcgtttatcatataagtgcttatatataagttatttctataacaaaagataaaata 16790183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Original strand, 32703059 - 32703113
Alignment:
Q  160 catttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    |||||||||| ||| || ||||||||||| | ||||||||||||||| |||||||    
T  32703059 catttatcatataaatgtttatgtataagctatttctattataaaagataaaata 32703113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 163 - 214
Target Start/End: Original strand, 2514626 - 2514677
Alignment:
Q  163 ttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    ||||||| |||||||||||||||||| | ||||||| ||||||| |||||||    
T  2514626 ttatcatgtaagtgcttatgtataagctatttctataataaaagataaaata 2514677  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 1497888 - 1497929
Alignment:
Q  147 cttataacataaacatttatcatttaagtgcttatgtataag 188  Q
    |||||| |||||||| ||||||||||||||||||||| ||||    
T  1497888 cttatagcataaacacttatcatttaagtgcttatgtttaag 1497929  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 214
Target Start/End: Complemental strand, 4325455 - 4325403
Alignment:
Q  162 tttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    |||||||| ||||||||||||| |||||| ||||||| ||||| | |||||||    
T  4325455 tttatcatataagtgcttatgtctaagttatttctataataaatgataaaata 4325403  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 214
Target Start/End: Original strand, 49557035 - 49557116
Alignment:
Q  133 agcttaattaacaacttataacataaacatttatcatttaagtgcttatgtataagttgtttctattataaaaggtaaaata 214  Q
    |||||||||||   |||||||| ||| || ||||||| ||||||||  |||||||||| ||||||| | ||||| |||||||    
T  49557035 agcttaattaagtgcttataacgtaatcacttatcatataagtgctgctgtataagttatttctataacaaaagataaaata 49557116  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 194
Target Start/End: Complemental strand, 51256910 - 51256882
Alignment:
Q  166 tcatttaagtgcttatgtataagttgttt 194  Q
    |||||||||||||||||||||||||||||    
T  51256910 tcatttaagtgcttatgtataagttgttt 51256882  T

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