View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7619_high_2 (Length: 530)
Name: NF7619_high_2
Description: NF7619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7619_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 46452332 - 46451816
Alignment:
| Q |
1 |
acctcaaagagaaaccactatttatatttatagattggtgttggcttctaaccgcaaattttatagaccttaatcatgccccccttatagaagtcaataa |
100 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
46452332 |
acctcaaagagaaactactatttatatttatagattggtgttggcttctaaccgcaaattttatagactttaatcatgccccccttatagaagtcaataa |
46452233 |
T |
|
| Q |
101 |
cacaattttgtgacaattacaagcttttaggctttaatcaacatcaagaaatttgcttcaaatcaatgataaaaaa-tatgctttatgaaattccatacg |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
46452232 |
cacaattttgtgacaattacaagcttttaggctttaatcaacatcaagaaatttgcttcaaatcaatgataaaaaaatatgctttatgaaattccatacg |
46452133 |
T |
|
| Q |
200 |
aatatacataaagtttcatgtattggctcctaatcataaaccctaaaccttaatcgtctccctatagaaatctattacacaagggaggtacccttaacat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
46452132 |
aatatacataaagtttcatgtattggctcctaatcataaaccctaaaccttaatcgtcttcctatagaaatctattacacaagggaggtacccttaacat |
46452033 |
T |
|
| Q |
300 |
actctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgacttggactcaacact |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46452032 |
actctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttgacttggactcaacact |
46451933 |
T |
|
| Q |
400 |
aacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaacaaaccc |
499 |
Q |
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| T |
46451932 |
aacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatatttgatcaaacaaaccc |
46451833 |
T |
|
| Q |
500 |
tgtccatttgctatttc |
516 |
Q |
| |
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||||| ||||||||||| |
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| T |
46451832 |
tgtccttttgctatttc |
46451816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 265 - 516
Target Start/End: Original strand, 46344489 - 46344740
Alignment:
| Q |
265 |
agaaatctattacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
364 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344489 |
agaaatctattacacaagggaggtacccttaacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
46344588 |
T |
|
| Q |
365 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46344589 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
46344688 |
T |
|
| Q |
465 |
gaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttc |
516 |
Q |
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| T |
46344689 |
gaattccaccaccagatatttgatcaaacaaaccctgtccttttgctatttc |
46344740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 265 - 516
Target Start/End: Complemental strand, 46463035 - 46462784
Alignment:
| Q |
265 |
agaaatctattacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
364 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46463035 |
agaaatctattacacaagggaggtacccttaacatactctgtaaaggccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatct |
46462936 |
T |
|
| Q |
365 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
464 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46462935 |
gaagacataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatg |
46462836 |
T |
|
| Q |
465 |
gaattccaccaccagatatttgatcaaacaaaccctgtccatttgctatttc |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
46462835 |
gaattccaccaccagatatttgatcaaacaaaccctgtccttttgctatttc |
46462784 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 173 - 512
Target Start/End: Complemental strand, 46471756 - 46471415
Alignment:
| Q |
173 |
aaaatatgctttatgaaattccatacgaatatacataaagtttcatgtattggctcctaatcataaaccctaaa--ccttaatcgtctccctatagaaat |
270 |
Q |
| |
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||||||| |||| |||||| |||| |||||||||||| ||| || | |||||| |||| || |||||||| | | |||||| | |||||||| || | |
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| T |
46471756 |
aaaatattatttaagaaattacataagaatatacataaggttctatct-ttggcttctaaccacaaaccctatagactttaatcatgtccctataaaact |
46471658 |
T |
|
| Q |
271 |
cta-ttacacaagggaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaaga |
369 |
Q |
| |
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||| ||||||||||| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||| || |
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| T |
46471657 |
ctacttacacaagggcagtacccttaacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgagga |
46471558 |
T |
|
| Q |
370 |
cataacaccttttgacttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaatt |
469 |
Q |
| |
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||| | |||||||||||| ||||||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||| |||||||||||| ||| |
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| T |
46471557 |
catgataccttttgacttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggatt |
46471458 |
T |
|
| Q |
470 |
ccaccaccagatatttgatcaaacaaaccctgtccatttgcta |
512 |
Q |
| |
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|||||||||||||||||||| ||||||||||| || ||||||| |
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| T |
46471457 |
ccaccaccagatatttgatcgaacaaaccctgcccttttgcta |
46471415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 187 - 512
Target Start/End: Complemental strand, 46466537 - 46466210
Alignment:
| Q |
187 |
gaaattccatacgaatatacataaagtttcatgtattggctcctaatcataaaccctaaa--ccttaatcgtctccctatagaaatcta-ttacacaagg |
283 |
Q |
| |
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|||||| |||| |||||||||||| ||| || | |||||| |||| || |||||||| | | |||||| | |||||||| || |||| |||||||||| |
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| T |
46466537 |
gaaattacataagaatatacataaggttctatct-ttggcttctaaccacaaaccctatagactttaatcatgtccctataaaactctacttacacaagg |
46466439 |
T |
|
| Q |
284 |
gaggtacccttaacatactctgtaaaagccaaagcaatcaaacccaacatagcaattcttccattccatagttctgcatctgaagacataacaccttttg |
383 |
Q |
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| |||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||| || ||||||| ||| ||||| | |||||||| |
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| T |
46466438 |
gcagtacccttaacatattctgtaacagccagagcaatcaaacccaacatagcaattcttccattccaaagctctgcatttgaggacatgataccttttg |
46466339 |
T |
|
| Q |
384 |
acttggactcaacactaacaccttggaaaaatggaatcaaagaagcaagtgacaacaacacacttgtccccaagaaccatggaattccaccaccagatat |
483 |
Q |
| |
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|||| ||||||||||||||||||| || ||||||| ||||||||||| || ||||||||||||||| |||||||||||| ||||||||||||||||| |
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|
| T |
46466338 |
acttagactcaacactaacaccttcaaataatggaaccaaagaagcaactgtcaacaacacacttgtatacaagaaccatgggattccaccaccagatat |
46466239 |
T |
|
| Q |
484 |
ttgatcaaacaaaccctgtccatttgcta |
512 |
Q |
| |
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|||||| ||||||||||| || ||||||| |
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|
| T |
46466238 |
ttgatcgaacaaaccctgcccttttgcta |
46466210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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