View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7619_high_5 (Length: 349)
Name: NF7619_high_5
Description: NF7619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7619_high_5 |
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| [»] chr6 (1 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 14 - 349
Target Start/End: Complemental strand, 27076110 - 27075775
Alignment:
| Q |
14 |
tggacatcactgacaagatgtacttcagatatgacggcagcaataacatcatcatcgtcatatttcttatcatctccttgagtcaaatttgcttttggct |
113 |
Q |
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||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27076110 |
tggacatcattgacaagatgtactttagatatgacggcagcaataacatcatcatcgtcatatttcttatcatctccttgagtcaaatttgcttttggct |
27076011 |
T |
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| Q |
114 |
taggaggctggccattcactttccgatatctacagtgatatgctttatgtcctttctttccacacacatagcactcacctaggtttgctttgaaattagg |
213 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27076010 |
taggaggctggccattcactttccgatatctgcagtgatatgctttatgtcctttctttccacacacatagcactcacctaggtttgctttgaaattagg |
27075911 |
T |
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| Q |
214 |
gttagttactttgagagcatgatcagatttgttctcatacctctgttgtttacgcgcattgttttggatcagatttgctctcgattccaaagctttggca |
313 |
Q |
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| T |
27075910 |
gttagttactttgagagcatgatcagatttgttctcatacctctgttgtttacgcgcattgttttggatcagatttgctctcgattccaaagctttggca |
27075811 |
T |
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| Q |
314 |
cgtgcagctccgcattccttcctgctggtgtcttca |
349 |
Q |
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| T |
27075810 |
cgtgcagctccgcattccttcctgctggtgtcttca |
27075775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 14 - 248
Target Start/End: Complemental strand, 26051092 - 26050858
Alignment:
| Q |
14 |
tggacatcactgacaagatgtacttcagatatgacggcagcaataacatcatcatcgtcatatttcttatcatctccttgagtcaaatttgcttttggct |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26051092 |
tggacatcactgacaagatgtacttcagatatgacggcaaccataacatcatcatcgtcatatttcttatcatctccttgagtcaaatttgcttttggct |
26050993 |
T |
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| Q |
114 |
taggaggctggccattcactttccgatatctacagtgatatgctttatgtcctttctttccacacacatagcactcacctaggtttgctttgaaattagg |
213 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26050992 |
taggaggctggccattcactttccgatatctgcagtgatatgctttatgtcctttctttccacacacatagcactcacctaggtttgctttgaaattagg |
26050893 |
T |
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| Q |
214 |
gttagttactttgagagcatgatcagatttgttct |
248 |
Q |
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| T |
26050892 |
gttagttactttgagagcatgatcagatttgttct |
26050858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 280 - 349
Target Start/End: Complemental strand, 26050872 - 26050803
Alignment:
| Q |
280 |
gatcagatttgctctcgattccaaagctttggcacgtgcagctccgcattccttcctgctggtgtcttca |
349 |
Q |
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| T |
26050872 |
gatcagatttgttctggattccaaagctttggcacgtgcagctccgcattccttcctgctggtgtcttca |
26050803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 349
Target Start/End: Original strand, 14635432 - 14635762
Alignment:
| Q |
17 |
acatcactgacaagatgtacttcagatatgacggcagcaataacatcatcatcgtcatatttcttatcatctcct-tgagtcaaatttgcttttggctta |
115 |
Q |
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||||||||||||||||| ||||||||||||| |||| |||||||||||||||| || |||||||||||| || ||| |||||||||||||||||||| |
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| T |
14635432 |
acatcactgacaagatgcacttcagatatgatggcaacaataacatcatcatcatc---tttcttatcatcccccctgaatcaaatttgcttttggctta |
14635528 |
T |
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| Q |
116 |
ggaggctggccattcactttccgatatctacagtgatatgctttatgtcctttctttccacacacatagcactcacctaggtttgctttgaaattagggt |
215 |
Q |
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|||||||| ||||||||||| || |||| |||||||||| ||||||| |||||||||||||||||||||| | |||||||||||| || ||||| | |
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| T |
14635529 |
ggaggctgatcattcactttctgaaatctgcagtgatatgttttatgttctttctttccacacacatagcagtaacctaggtttgccttaaaattgattt |
14635628 |
T |
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| Q |
216 |
tagttactttgagagcatgatcagatttgttctcatacctctgttgtttacgcgcattgttttggatcagatttgctctcgattccaaagctttggcacg |
315 |
Q |
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||||||||||||||||||||||| ||||||| ||||||| |||||||| | || |||||||||||| ||||||||||| || |||||||||||||| || |
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| T |
14635629 |
tagttactttgagagcatgatcatatttgttttcatacccttgttgtttgcacgtattgttttggattagatttgctcttgactccaaagctttggctcg |
14635728 |
T |
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| Q |
316 |
tgcagctccgcattccttcctgctggtgtcttca |
349 |
Q |
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||| ||| | ||||| || |||||||| ||||| |
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| T |
14635729 |
tgcggcttcacattcttttttgctggtgccttca |
14635762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 94; Significance: 8e-46; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 127 - 349
Target Start/End: Complemental strand, 36611012 - 36610788
Alignment:
| Q |
127 |
attcactttccgatatctacagtgatatgctttatgtcctttctttccacacacatagcactcacctaggtttgctttgaaattagggttagttactttg |
226 |
Q |
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|||||||||||||| ||| || |||||||||||||| ||||||||||||||||||||||| ||||||||| ||| ||||| ||||||||||| || |
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| T |
36611012 |
attcactttccgatgtctgcaatgatatgctttatgacctttctttccacacacatagcaacaacctaggttcaatttaaaattgaggttagttactctg |
36610913 |
T |
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| Q |
227 |
agagcatgatcagatttgttctcatacctctgttgtttacgcgcattgttttggat--cagatttgctctcgattccaaagctttggcacgtgcagctcc |
324 |
Q |
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| T |
36610912 |
agggcatgatcatttttattttcatatctctgttgtttgcgtgtattgttttggattatagattttctctcgactccaaagctttggctcgagcagctcc |
36610813 |
T |
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| Q |
325 |
gcattccttcctgctggtgtcttca |
349 |
Q |
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|||||||| ||||||||||||||| |
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| T |
36610812 |
acattcctttctgctggtgtcttca |
36610788 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 96 - 319
Target Start/End: Original strand, 36611023 - 36611240
Alignment:
| Q |
96 |
tcaaatttgcttttggcttaggaggctggccattcactttccgatatctacagtgatatgctttatgtcctttctttccacacacatagcactcacctag |
195 |
Q |
| |
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||||||||||||||||||||||||| ||||||| |||||| |||||||| || ||||||| |||||| ||||||||| |||||| | | || | |||| |
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| T |
36611023 |
tcaaatttgcttttggcttaggaggttggccatacacttttcgatatctgcaatgatatgttttatgacctttctttacacaca-acaaca---aactag |
36611118 |
T |
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| Q |
196 |
gtttgctttgaaattagggttagttactttgagagcatgatcagatttgttctcatacctctgttgtttacgcgcattgttttggatcagatttgctctc |
295 |
Q |
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||| || || || |||||||||||| ||| |||||||||| ||| || ||||| |||||| ||| || | |||||| ||||| || ||||||||| |
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| T |
36611119 |
gttcaattcaaatttggggttagttactccgagggcatgatcagttttattttcata--tctgttctttgcgtgtattgttgtggattaggtttgctctc |
36611216 |
T |
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| Q |
296 |
gattccaaagctttggcacgtgca |
319 |
Q |
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|| | |||||||||||| |||||| |
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| T |
36611217 |
gagttcaaagctttggctcgtgca |
36611240 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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