View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7619_low_12 (Length: 222)
Name: NF7619_low_12
Description: NF7619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7619_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 42635774 - 42635647
Alignment:
| Q |
73 |
catgctaggaataggaaataactcactgacaaaaatgctagagaaactaaagtaatttcagctcttggcattatatagtataatatagttaagaatattc |
172 |
Q |
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| T |
42635774 |
catgctaggaataggaaataactcactgacaaaaatgctagagaaactaaagtaatttcagctcttggcattatatagtataatatagttaagaatattc |
42635675 |
T |
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| Q |
173 |
taatgctgccacaaagatgaagtttcac |
200 |
Q |
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||||||||||| |||||||||||||||| |
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| T |
42635674 |
taatgctgccataaagatgaagtttcac |
42635647 |
T |
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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 73 - 185
Target Start/End: Original strand, 44095799 - 44095907
Alignment:
| Q |
73 |
catgctaggaataggaaataactcactgacaaaaatgctagagaaactaaagtaatttcagctcttggcattatatagtataatatagttaagaatattc |
172 |
Q |
| |
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|||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||| || || ||||||| ||||||||||||||| | ||||| |
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| T |
44095799 |
catgctaggaataggaaataaccttctgacaaaaattctagagaaactaaagtaaattcttctattagcattat---gtataatatagttaa-agtattc |
44095894 |
T |
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| Q |
173 |
taatgctgccaca |
185 |
Q |
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||||||||||||| |
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| T |
44095895 |
taatgctgccaca |
44095907 |
T |
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