View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7619_low_4 (Length: 370)

Name: NF7619_low_4
Description: NF7619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7619_low_4
NF7619_low_4
[»] chr5 (2 HSPs)
chr5 (1-370)||(39184643-39185012)
chr5 (25-236)||(8730292-8730501)
[»] chr1 (4 HSPs)
chr1 (32-247)||(42373538-42373752)
chr1 (23-363)||(17032753-17033101)
chr1 (25-251)||(19597952-19598180)
chr1 (181-249)||(41919898-41919966)
[»] chr2 (4 HSPs)
chr2 (25-236)||(25505406-25505615)
chr2 (25-241)||(22885907-22886124)
chr2 (130-256)||(31902910-31903036)
chr2 (130-285)||(39339357-39339512)
[»] chr4 (4 HSPs)
chr4 (138-255)||(16501182-16501300)
chr4 (39-241)||(46699364-46699566)
chr4 (181-249)||(30963879-30963947)
chr4 (69-124)||(12295557-12295612)
[»] chr7 (6 HSPs)
chr7 (89-249)||(37792747-37792908)
chr7 (187-249)||(38484991-38485053)
chr7 (130-285)||(47326396-47326551)
chr7 (187-256)||(3420242-3420311)
chr7 (138-241)||(12480298-12480402)
chr7 (181-249)||(38305676-38305744)
[»] chr3 (4 HSPs)
chr3 (26-213)||(25595029-25595217)
chr3 (76-241)||(5555991-5556158)
chr3 (130-251)||(17501759-17501880)
chr3 (140-238)||(1653452-1653550)
[»] chr8 (4 HSPs)
chr8 (102-254)||(9519052-9519205)
chr8 (187-249)||(34866640-34866702)
chr8 (162-241)||(10551752-10551832)
chr8 (181-249)||(34389590-34389658)
[»] chr6 (1 HSPs)
chr6 (138-249)||(12793553-12793664)


Alignment Details
Target: chr5 (Bit Score: 326; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 39184643 - 39185012
Alignment:
Q  1 cctcacccccaccaccaacaccaacaagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  39184643 cctcacccccaccaccaacaccaacaagacaacaaagttgaaagacttcaaggaaagcggccacaacgccatagcattccgaagaagcagccacgaagaa 39184742  T
Q  101 tatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaaca 200  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  39184743 tatacccacaagccaacgatagagccaaaactacgccgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatatataggaagacgaaaca 39184842  T
Q  201 caactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgtatgtcgccg 300  Q
    |||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  39184843 caactacaaaacataggcaacgacgccagtttgaagcagaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacatatgtcgccg 39184942  T
Q  301 gagtaaacaaccaaccccattaacctgcggaactgacccaatcgaagccgatctcagcaacaaaatcacc 370  Q
    |||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||||||    
T  39184943 gagtaaacaaccaaccccatgaacctgcggaactgaccgaatggaagctgatctcagcaacaaaatcacc 39185012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 236
Target Start/End: Complemental strand, 8730501 - 8730292
Alignment:
Q  25 caagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 124  Q
    |||||||||||||||||||| |||||||| ||||  | ||| ||||||||||||   |||| ||| |||| |  ||||||||||| | ||||||||||||    
T  8730501 caagacaacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattataaagaggcaaccacaataaatatacccaccaaccaacgatagag 8730402  T
Q  125 ccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgac 224  Q
     || |||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | ||||||||||| |  ||| |||||||| ||||| ||||    
T  8730401 acagaactacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaagccaaacaacaaaacacgggcagcgac 8730304  T
Q  225 gccagtttgaag 236  Q
    |||||| |||||    
T  8730303 gccagtctgaag 8730292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 32 - 247
Target Start/End: Complemental strand, 42373752 - 42373538
Alignment:
Q  32 acaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagccaaaac 131  Q
    ||||||||||| | ||||||||||| | || ||| ||||||||||||||||||||||||||||   |||||||||||||| |||| ||||||| ||||||    
T  42373752 acaaagttgaaggtctccaaggaaatcagcaacatcgccatagcattccgaagaagcagccacagtgaatatacccacaa-ccaaagatagagacaaaac 42373654  T
Q  132 tacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtt 231  Q
    ||||| | |||||| ||||||||||||||||| ||| |||| | |||| ||| ||||||||||||||||||||| ||||||| |||||||||| || |||    
T  42373653 tacgccgtcaaaccacctcaccaagaaaacaggcagtaacatagaacagatcgataggaagacgaaacacaacttcaaaacacgggcaacgacaccggtt 42373554  T
Q  232 tgaagcggaatcacaa 247  Q
    ||||||||||||||||    
T  42373553 tgaagcggaatcacaa 42373538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 23 - 363
Target Start/End: Complemental strand, 17033101 - 17032753
Alignment:
Q  23 aacaagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatag 122  Q
    |||||||||||||||||||| | ||| ||||||||| |||||| |||||||||||||||||||||||||||||  ||||| ||||||||  || ||||||    
T  17033101 aacaagacaacaaagttgaaggtctctaaggaaagcagccacatcgccatagcattccgaagaagcagccacgttgaataaacccacaaatcagcgatag 17033002  T
Q  123 ag-ccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaa---aacatatctataggaagacgaaacacaactac-aaaacatggg 217  Q
    || | |||||||| ||||||||||| |||||||||||||||  |||||||| ||    ||||||||| ||||||||||||  |||| || ||||||  ||    
T  17033001 agacaaaaactacactgccaaaccgtctcaccaagaaaacaagcagcaacataatatcacatatctagaggaagacgaaatccaacaacaaaaacacagg 17032902  T
Q  218 caacgacgccagtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggagaaaacgtatgtcgccggagtaaac---aaccaa 314  Q
     |  ||| || || |||||| |||||||||||   |||| | |||||  || |||||||||| |||| | || |  |||| ||||||||||   ||||||    
T  17032901 tagtgaccccggtgtgaagcagaatcacaaccctgatcaaaaaaatgtggccgccggtgacaaggaggagacttccgtcgtcggagtaaacaaaaaccaa 17032802  T
Q  315 ccccattaacctgcggaactgacccaatcgaagccgatctcagcaacaa 363  Q
      |||| |||||||  |||||||  |||||| ||| |||||||||||||    
T  17032801 gtccatgaacctgcaaaactgactgaatcgacgccaatctcagcaacaa 17032753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 25 - 251
Target Start/End: Complemental strand, 19598180 - 19597952
Alignment:
Q  25 caagacaacaaagttgaaagactccaaggaaagcggcca-caccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgataga 123  Q
    ||||||||| | ||| || | ||||||||||||| || | || | ||||||||||| |||||| || |||| |||||||||| ||||| ||| ||| |||    
T  19598180 caagacaacgaggtttaatgtctccaaggaaagcagcaaacatcaccatagcattctgaagaatcaaccacaaagaatatactcacaaaccatcgaaaga 19598081  T
Q  124 gccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaac 221  Q
    | ||||  ||||||  ||||||| |||| |||||||| ||| ||||||| |||| ||| | | | ||||||| ||||| |||| ||| |||| |||||||    
T  19598080 gacaaaggctacgcctccaaaccacctcgccaagaaa-caggcagcaacccaaacacaaaccaaaaggaagatgaaacccaacaacagaacacgggcaac 19597982  T
Q  222 gacgccagtttgaagcggaatcacaaccta 251  Q
    |||||| || ||||| |||| |||||||||    
T  19597981 gacgccggtctgaagtggaaacacaaccta 19597952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 41919966 - 41919898
Alignment:
Q  181 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 249  Q
    ||||| ||||||| ||||  | || |||||||| ||||||||||||  ||||||||||||| |||||||    
T  41919966 atctagaggaagatgaaatcccacaacaaaacacgggcaacgacgctggtttgaagcggaaccacaacc 41919898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 2e-25; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 25 - 236
Target Start/End: Original strand, 25505406 - 25505615
Alignment:
Q  25 caagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 124  Q
    |||||||||||||||||||| |||||||| ||||  | ||| ||||||||||||   |||| ||| |||| |  ||||||||||| | ||||||||||||    
T  25505406 caagacaacaaagttgaaagtctccaaggtaagcaacaacatcgccatagcattataaagaggcaaccacaataaatatacccaccaaccaacgatagag 25505505  T
Q  125 ccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgac 224  Q
     || |||||| ||||||||| | |||| || |||||||| |||||||| |||| | ||| | ||||||||||| |  ||| |||||||| ||||| ||||    
T  25505506 acagaactacactgccaaactgtctca-catgaaaacaggcagcaaca-aaaatagatccagaggaagacgaagccaaacaacaaaacacgggcagcgac 25505603  T
Q  225 gccagtttgaag 236  Q
    |||||| |||||    
T  25505604 gccagtctgaag 25505615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 25 - 241
Target Start/End: Original strand, 22885907 - 22886124
Alignment:
Q  25 caagacaacaaagttgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 124  Q
    |||||||||||  ||||||| ||| ||||||||| |  ||| |||| ||||||| ||||||||||||||| | |||||||||||||| | |  |||||||    
T  22885907 caagacaacaagattgaaagtctctaaggaaagcaggaacatcgccttagcatttcgaagaagcagccacaacgaatatacccacaaactagtgatagag 22886006  T
Q  125 cca-aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacaca-aaacatatctataggaagacgaaacacaactacaaaacatgggcaacg 222  Q
      | |||| |||| |||||||| |||||||||| |||||  ||||||||||   ||||||| | ||||||| ||||| |||| |||||||| ||  | ||    
T  22886007 atagaaaccacgccgccaaaccacctcaccaag-aaacaagcagcaacacagttacatatcaagaggaagatgaaacccaacaacaaaacacggatagcg 22886105  T
Q  223 acgccagtttgaagcggaa 241  Q
    |||||||| ||||||||||    
T  22886106 acgccagtctgaagcggaa 22886124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 130 - 256
Target Start/End: Original strand, 31902910 - 31903036
Alignment:
Q  130 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 228  Q
    ||||||| ||||||  |||||| ||||||| || |||||||||| || | | ||||| ||||||||||||| |||| |||||||| ||||| |||||||     
T  31902910 actacgccgccaaatagcctcagcaagaaa-caaacagcaacactaacatagatctagaggaagacgaaacccaacaacaaaacacgggcagcgacgccg 31903008  T
Q  229 gtttgaagcggaatcacaacctaaatca 256  Q
    ||||||||||||| ||||||||| ||||    
T  31903009 gtttgaagcggaaacacaacctagatca 31903036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 130 - 285
Target Start/End: Original strand, 39339357 - 39339512
Alignment:
Q  130 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 228  Q
    ||||||| |||||||  ||||||||||||| |||||||||||||||| | | ||||| ||||||| ||||  |||| |||||||| | ||| ||||| |     
T  39339357 actacgccgccaaacatcctcaccaagaaa-cagacagcaacacaaatatagatctagaggaagaggaaatccaacaacaaaacacgagcagcgacgtcg 39339455  T
Q  229 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 285  Q
    |||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  39339456 gtttgaagtgaaaacacaaccaaaatcatagaaaggcggccgccggtgacaaggaga 39339512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 138 - 255
Target Start/End: Complemental strand, 16501300 - 16501182
Alignment:
Q  138 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 236  Q
    |||||||||||||||||||||||||||| || ||||||| ||| || || |||||||| |||  |||| ||| |||||||||| ||||||| ||||||||    
T  16501300 gccaaaccgcctcaccaagaaaacagacggccacacaaacacaaatttagaggaagactaaaaccaacaacacaacatgggcagcgacgccggtttgaag 16501201  T
Q  237 cggaatcacaacctaaatc 255  Q
     |||||||||||| |||||    
T  16501200 tggaatcacaacccaaatc 16501182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 39 - 241
Target Start/End: Original strand, 46699364 - 46699566
Alignment:
Q  39 tgaaagactccaaggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagagcca-aaactacgct 137  Q
    |||||| ||| ||||||||| || ||| | ||||| ||||||||||||||||||| |  |||| ||||||||| ||| ||||| ||  | |||||||||     
T  46699364 tgaaagtctcgaaggaaagcagcaacatcaccataacattccgaagaagcagccatggtgaatttacccacaaaccagcgataaagatataaactacgcc 46699463  T
Q  138 gccaaaccgcctcaccaagaaaacagacagcaacacaaaacatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 237  Q
    |||||||| |||||||||| | |||| || ||||  || ||| ||| ||||||||| |||   |||| |||| ||| ||||| |||||||  ||||||||    
T  46699464 gccaaaccacctcaccaag-acacaggcatcaaccaaacacagatcaataggaagatgaattccaacaacaatacacgggcagcgacgccgatttgaagc 46699562  T
Q  238 ggaa 241  Q
    ||||    
T  46699563 ggaa 46699566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 30963947 - 30963879
Alignment:
Q  181 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 249  Q
    ||||| ||||||||||||  |||| |||||||| ||||| ||||||| |||||||| |||| |||||||    
T  30963947 atctagaggaagacgaaatccaaccacaaaacacgggcatcgacgccggtttgaagtggaaccacaacc 30963879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 69 - 124
Target Start/End: Complemental strand, 12295612 - 12295557
Alignment:
Q  69 ccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 124  Q
    ||||||||||| |||||||||||||||  |||||||||||||| ||| | ||||||    
T  12295612 ccatagcattctgaagaagcagccacggtgaatatacccacaaaccatcaatagag 12295557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 9e-18; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 89 - 249
Target Start/End: Complemental strand, 37792908 - 37792747
Alignment:
Q  89 agccacgaagaatatacccacaagccaacgatagagcca-aaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctat 186  Q
    |||||||| ||||| |||||||| ||||||| |||| || ||||||||| ||||||||  |  ||||||||| |||||||||||||||| ||  ||| |     
T  37792908 agccacgatgaataaacccacaaaccaacgacagagacagaaactacgccgccaaaccagccaaccaagaaa-cagacagcaacacaaacacggatcaag 37792810  T
Q  187 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 249  Q
    || |||| ||||| ||||  ||||||| || |||||||||| ||||||||||||| |||||||    
T  37792809 agaaagatgaaacccaacagcaaaacacggacaacgacgccggtttgaagcggaaacacaacc 37792747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 249
Target Start/End: Complemental strand, 38485053 - 38484991
Alignment:
Q  187 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 249  Q
    |||||||||||||   || |||||||||||||| ||||||| ||||||||||||| |||||||    
T  38485053 aggaagacgaaacctgacaacaaaacatgggcagcgacgccggtttgaagcggaaacacaacc 38484991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 285
Target Start/End: Original strand, 47326396 - 47326551
Alignment:
Q  130 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 228  Q
    ||||||| |||||||  |||||||||| |||||  |||||||||||| |   ||||| ||||||| ||||  |||| |||||||| ||||| |||| ||     
T  47326396 actacgccgccaaacatcctcaccaag-aaacaagcagcaacacaaatattgatctagaggaagaggaaatccaacaacaaaacacgggcagcgacaccg 47326494  T
Q  229 gtttgaagcggaatcacaacctaaatcagagaaatgcagctgccggtgacatggaga 285  Q
     ||||||| | || ||||||| |||||| ||||| || || |||||||||| |||||    
T  47326495 atttgaagtgaaaacacaaccgaaatcatagaaaggcggccgccggtgacaaggaga 47326551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 3420242 - 3420311
Alignment:
Q  187 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaatca 256  Q
    |||||||||||||  ||| |||||||| | ||| ||||||| ||| ||||||||| ||||||||| ||||    
T  3420242 aggaagacgaaaccaaacaacaaaacacgagcagcgacgccggttcgaagcggaaccacaacctagatca 3420311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 241
Target Start/End: Complemental strand, 12480402 - 12480298
Alignment:
Q  138 gccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagac-gaaacacaactacaaaacatgggcaacgacgccagtttgaa 235  Q
    |||||||||||||||||||||||||||  || ||||||| ||| ||| | |||||||| ||||  |||| |||||||| | ||| ||||||| |||||||    
T  12480402 gccaaaccgcctcaccaagaaaacagatggccacacaaatacagatc-agaggaagactgaaaaccaacaacaaaacacgagcagcgacgccggtttgaa 12480304  T
Q  236 gcggaa 241  Q
    | ||||    
T  12480303 gtggaa 12480298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 249
Target Start/End: Complemental strand, 38305744 - 38305676
Alignment:
Q  181 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 249  Q
    ||||| ||||||||||||  |||| ||||||||  |||| | ||||| ||||||||||||| |||||||    
T  38305744 atctagaggaagacgaaatccaacaacaaaacacaggcagcaacgccggtttgaagcggaaccacaacc 38305676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 213
Target Start/End: Original strand, 25595029 - 25595217
Alignment:
Q  26 aagacaacaaagttgaaagactccaa-ggaaagcggccacaccgccatagcattccgaagaagcagccacgaagaatatacccacaagccaacgatagag 124  Q
    |||||| | ||| |||||| |||||| ||||||| || ||| |||||| || |||| || | |||||||||   || ||||||| || | | ||||||||    
T  25595029 aagacagcgaagatgaaagtctccaaaggaaagcagcaacatcgccattgccttccaaaaatgcagccacggttaaaatacccataaacgagcgatagag 25595128  T
Q  125 ccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacac-aaaacatatctataggaagacgaaacacaactacaaaaca 213  Q
     | |||||||| |||||||||||||||||||| |||||  ||||||||| |||||| ||||| |||| ||||||||| ||| ||||||||    
T  25595129 acgaaactacgttgccaaaccgcctcaccaag-aaacaagcagcaacacaaaaacaaatctagaggatgacgaaacataacaacaaaaca 25595217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 241
Target Start/End: Complemental strand, 5556158 - 5555991
Alignment:
Q  76 attccgaagaagcagccacgaagaatatacccacaagccaacgatagagccaaaactacgctgccaaaccgcctcaccaagaaaacagacagcaacacaa 175  Q
    |||||||||||||| |||    |||||||||||||| ||| ||| |||| |||||| | || ||| ||||||| ||||| |||||||  |||||||||||    
T  5556158 attccgaagaagcaaccatagtgaatatacccacaaaccagcgacagagacaaaacaatgcagcctaaccgccacaccatgaaaacaagcagcaacacaa 5556059  T
Q  176 a-acatatcta-taggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 241  Q
    | ||||||||| |  ||||||||| | |||| | | |||| ||||| ||||||| || ||||||||||    
T  5556058 acacatatctattttgaagacgaagcccaacaaaagaacacgggcagcgacgccggtctgaagcggaa 5555991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 130 - 251
Target Start/End: Original strand, 17501759 - 17501880
Alignment:
Q  130 actacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgcca 228  Q
    |||||||||||||||  ||||||||| |||| ||  ||||||||||| | | ||||| ||||||||||||   ||| |||||||| || ||| |||| ||    
T  17501759 actacgctgccaaacatcctcaccaa-aaaataggaagcaacacaaatatagatctagaggaagacgaaatctaacaacaaaacacggacaatgacgtca 17501857  T
Q  229 gtttgaagcggaatcacaaccta 251  Q
    ||||||||||||| |||||||||    
T  17501858 gtttgaagcggaaacacaaccta 17501880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 238
Target Start/End: Original strand, 1653452 - 1653550
Alignment:
Q  140 caaaccgcctcaccaagaaaacagacagcaacacaaaacatatctat--aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagc 237  Q
    |||||| |||||| |||||| ||| |||||||||||| ||||  |||  ||||||||||||  |||| |||||||| ||||| ||||||| |||||||||    
T  1653452 caaacctcctcacgaagaaa-caggcagcaacacaaa-cataaatatggaggaagacgaaatccaacaacaaaacacgggcatcgacgccggtttgaagc 1653549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 102 - 254
Target Start/End: Complemental strand, 9519205 - 9519052
Alignment:
Q  102 atacccacaagccaacgatagagccaaaa-ctacgctgccaaaccgcctcaccaagaaaacagacagcaacacaaa-acatatctataggaagacgaaac 199  Q
    |||||||||| ||| |||||| | ||||| |||| | ||||| || |||||||| ||||||| ||||||| ||||| ||| ||||| || ||||||||||    
T  9519205 atacccacaaaccagcgatagggacaaaaactacaccgccaacccacctcaccatgaaaaca-acagcaatacaaacacaaatctagagaaagacgaaac 9519107  T
Q  200 acaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacctaaat 254  Q
     |||| |||||||| ||||| ||||||  ||||||||||| | ||||||| ||||    
T  9519106 ccaacaacaaaacacgggcagcgacgctggtttgaagcgggaacacaacccaaat 9519052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 187 - 249
Target Start/End: Original strand, 34866640 - 34866702
Alignment:
Q  187 aggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 249  Q
    ||||||||||||  |||| |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34866640 aggaagacgaaatccaacaacaaaacacgggcagcgacgccggtttgaagcggaaccacaacc 34866702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 162 - 241
Target Start/End: Complemental strand, 10551832 - 10551752
Alignment:
Q  162 agacagcaacacaaa-acatatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaa 241  Q
    ||||||||||||||| | | ||||| ||||||||||||| |||| ||||| || ||||| |||||||  ||||||||||||    
T  10551832 agacagcaacacaaacatagatctagaggaagacgaaacccaacaacaaagcacgggcagcgacgccgatttgaagcggaa 10551752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 249
Target Start/End: Original strand, 34389590 - 34389658
Alignment:
Q  181 atctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaagcggaatcacaacc 249  Q
    ||||| |||| |||||||  | || |||||||| ||||| ||||||| ||||||||||||| |||||||    
T  34389590 atctagaggaggacgaaattccacaacaaaacacgggcagcgacgccggtttgaagcggaagcacaacc 34389658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 138 - 249
Target Start/End: Complemental strand, 12793664 - 12793553
Alignment:
Q  138 gccaaaccgcctcaccaagaaaacagacagcaacacaaaac-atatctataggaagacgaaacacaactacaaaacatgggcaacgacgccagtttgaag 236  Q
    |||||||  ||||||||||||| ||||||||||||||||   | ||| | ||||||||||||  || |  ||||||| ||||||||||||||||||||||    
T  12793664 gccaaacaccctcaccaagaaa-cagacagcaacacaaatttagatccagaggaagacgaaatccatcaccaaaacacgggcaacgacgccagtttgaag 12793566  T
Q  237 cggaatcacaacc 249  Q
    || || |||||||    
T  12793565 cgaaaacacaacc 12793553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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