View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7619_low_8 (Length: 318)
Name: NF7619_low_8
Description: NF7619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7619_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 305
Target Start/End: Original strand, 40614275 - 40614562
Alignment:
| Q |
19 |
gtgatgagcccaatttttagttacatcaggtccaaaataaatgcatctccatgtgctcagtctttaattgagagcatacgttgctttcttggggtactta |
118 |
Q |
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| T |
40614275 |
gtgatgaacccaatttttagttacatcaggtccaaaataaatgcatctccatgtgctcagtctttaattgagagcatacgttgctttcttggggtactta |
40614374 |
T |
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| Q |
119 |
ggtttgatggtatttgatttgcttg---tattaaattagatttattatccctatttcggttgggtttgagggtaatttcttgttttagtagcaggtttta |
215 |
Q |
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| T |
40614375 |
ggtttgatggtatttgatttgcttgtactattaaattagatttattatccctatttcggttgggtttgagggtaatttcttgttttagtagcaggtttta |
40614474 |
T |
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| Q |
216 |
taattttcctcttctacaaggcacacacccttttggccacatttannnnnnnctcaactctataattttccccttcgacaagtcacaggt |
305 |
Q |
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| T |
40614475 |
taattttcctcttctacaagg--cacacccttttggccacatttatttttttctcaactctataattttccccttcgacaagtcacaggt |
40614562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 74 - 302
Target Start/End: Original strand, 40610375 - 40610598
Alignment:
| Q |
74 |
ctcagtctttaattgagagcatacgttgctttcttggggtacttaggtt---tgatggtatttgatttgcttgtattaaattagatttattatccctatt |
170 |
Q |
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| T |
40610375 |
ctcagtctttaattgagagcttaagttgctttcttggggtacttaggtttgatgatggtatttgattttcttgt-----attagatttattatccctgtt |
40610469 |
T |
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| Q |
171 |
tcggttgggtttgagggtaatttcttgttttagtagcaggttttataattttcctcttctacaaggcacacacccttttggccacatttannnnnnnctc |
270 |
Q |
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| T |
40610470 |
tcggttgggtttgagggtaattt-ttattttagtggcaggttgtataattttccccttctacaagg--cacacccttttggccacgtttatttttttctc |
40610566 |
T |
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| Q |
271 |
aactctataattttccccttcgacaagtcaca |
302 |
Q |
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| T |
40610567 |
aactctctaattttccccttcgacaagtcaca |
40610598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 19 - 77
Target Start/End: Original strand, 40617592 - 40617650
Alignment:
| Q |
19 |
gtgatgagcccaatttttagttacatcaggtccaaaataaatgcatctccatgtgctca |
77 |
Q |
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| T |
40617592 |
gtgatgaacccaatttttagttacatcaggtccaaaataaatgcatctccatgtgctca |
40617650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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