View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7619_low_9 (Length: 257)
Name: NF7619_low_9
Description: NF7619
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7619_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 237; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 8774835 - 8775079
Alignment:
| Q |
1 |
gtttttccacatgttgtagcaattgtttcccttttgttcctcaaaacatagttttcatcattcaaacacgttgtaaatatcttgtaggactgtgtatgag |
100 |
Q |
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| T |
8774835 |
gtttttccacatgttgtagcaattgtttcccttttgttcctgaaaacgtagttttcatcattcaaacacgttgtaaatatcttgtaggactgtgtatgag |
8774934 |
T |
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| Q |
101 |
tacagtcaaagagtgatttaaatttgtggatgaatattttccttaacatatcaattgtaagtttgtaacactaaaattgactgtttctctgttttttgtt |
200 |
Q |
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| T |
8774935 |
tacagtcaaagagtgatttaaatttgtggatgaatattttccttaacatatcaattgtaagtttgtaacactaaaattgactgtttctctgttttttgtt |
8775034 |
T |
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| Q |
201 |
aatgcttacagtgagtttttctttcccctttcaaaggaggatatt |
245 |
Q |
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| T |
8775035 |
aatgcttacagtgagtttttctttcccctttcaaaggaggatatt |
8775079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 171 - 244
Target Start/End: Original strand, 8764285 - 8764356
Alignment:
| Q |
171 |
ctaaaattgactgtttctctgttttttgttaatgcttacagtgagtttttctttcccctttcaaaggaggatat |
244 |
Q |
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| T |
8764285 |
ctaaaattgactgtttct--gttttttattaatgttttcagtgagtttttctttcccctctcaaaggaggatat |
8764356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 197
Target Start/End: Original strand, 8781050 - 8781229
Alignment:
| Q |
23 |
ttgtttcccttttgttcctcaaaacatagttttcatcattcaaacacgtt--gtaaatatcttgtaggactg----tgtatgagtacagtcaaagagtga |
116 |
Q |
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| T |
8781050 |
ttgttgcccttttgttcctcaaaacatagttttcatgattcagacttgttaggataatatctcgtaggattgtgtatgtatgaatacaataaatgagtgc |
8781149 |
T |
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| Q |
117 |
tttaaatttgtggatgaatattttccttaacatatcaattgtaagtttgtaacactaaaattgactgtttctctgtttttt |
197 |
Q |
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| T |
8781150 |
tttaaatttgtagataaatatattccttaagacatcagatatca-attgtaacactaaaattgattgtttctctctttttt |
8781229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 245
Target Start/End: Complemental strand, 2542780 - 2542561
Alignment:
| Q |
20 |
caattgtttcccttttgttcctcaaaacatagttttcatcattcaaacacgttgta--aatatcttgtaggactgtgtatgagtacagtcaaagagtgat |
117 |
Q |
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| T |
2542780 |
caattgttgctcttttgttcctcaaaatatagttgtcatgattcagacgtgttttacaaatatcttgtgggattgtgtatgaatgccgtcaatgagtgct |
2542681 |
T |
|
| Q |
118 |
ttaaatttgtggatgaatattttccttaacatatcaattgtaagtttgtaacactaaaattgactgtttctctgt-tttttgttaatgcttacagtgagt |
216 |
Q |
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|||| ||||| ||| |||||||||||||| ||| ||| |||| || |||||||||||||||| | |||||||||||| |||||||||| |
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| T |
2542680 |
ttaattttgtagataaatattttccttaagataccaa--------ttgtgaccttaaaattgactgtttcaaaatatttttgttaatgtttacagtgag- |
2542590 |
T |
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| Q |
217 |
ttttctttcccctttcaaaggaggatatt |
245 |
Q |
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| T |
2542589 |
ttttctttcccatttcaaaggaggatatt |
2542561 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 211 - 244
Target Start/End: Complemental strand, 3516317 - 3516284
Alignment:
| Q |
211 |
gtgagtttttctttcccctttcaaaggaggatat |
244 |
Q |
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||||||||||||||||||||||||| |||||||| |
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| T |
3516317 |
gtgagtttttctttcccctttcaaaagaggatat |
3516284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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