View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7620_high_7 (Length: 277)
Name: NF7620_high_7
Description: NF7620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7620_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 40453856 - 40453592
Alignment:
| Q |
1 |
tgtttatcttcatcttcatgaagcacttgagcattctttttgttatcatcaaccttagttaaacccaaaacaggttcataatctaatacaccatccaaag |
100 |
Q |
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| T |
40453856 |
tgtttatcttcatcttcatgaagcacttgagcattctttttgttatcatcaaccttagttaaacccaaaacaggttcataatctaatacaccatccaaag |
40453757 |
T |
|
| Q |
101 |
aaactgtgtcaccaagcaaatatcttgatgaagtaggaggagtgattaaatcagaagctggcttaacccaactccttcttaaaatactatcaaccggttt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453756 |
aaactgtgtcaccaagcaaatatcttgatgaagtaggaggagtgattaaatcagaagctggcttaacccaactccttcttaaaatactatcaaccggttt |
40453657 |
T |
|
| Q |
201 |
tgaagagtaattgtttgcaatatgttcagtcactttttctgttgtagtagtacttttcttcttct |
265 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40453656 |
tgaagagtaattgtttgcaatatgttcagtcactttttctgttgtagtagtacttttcttcttct |
40453592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 28229122 - 28229060
Alignment:
| Q |
1 |
tgtttatcttcatcttcatgaagcacttgagcattctttttgttatcatcaaccttagttaaa |
63 |
Q |
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| T |
28229122 |
tgtttatcttcatcttcacgaagcacttgagcattctttttgttatcatcaaccttagttaaa |
28229060 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 208
Target Start/End: Complemental strand, 31252532 - 31252370
Alignment:
| Q |
45 |
atcatcaaccttagttaaacccaaaacaggttcataatctaa-tacaccatccaaagaaactgtgtcaccaagcaaatatcttgatgaagtaggaggagt |
143 |
Q |
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|||||||| ||||||||||||||||||| | |||| ||||| | |||||||| ||||| | |||||||||||||||||||| | || |||| ||||| |
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| T |
31252532 |
atcatcaatcttagttaaacccaaaacaaggtcattgtctaaattcaccatccgaagaatttatgtcaccaagcaaatatcttaacgacttaggtggagt |
31252433 |
T |
|
| Q |
144 |
gattaaatcagaagctg-gcttaacccaactccttcttaaaatactatcaaccggttttgaagagt |
208 |
Q |
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||| || ||||||| || || |||||||||| ||||| |||||||||| ||||||||||||| |
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| T |
31252432 |
gatgaagtcagaaggtgacctaaacccaactc---cttaagatactatcaattggttttgaagagt |
31252370 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 31286474 - 31286398
Alignment:
| Q |
76 |
tcataatctaa-tacaccatccaaagaaactgtgtcaccaagcaaatatcttgatgaagtaggaggagtgattaaat |
151 |
Q |
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||||||||||| || |||||||||||||| || |||||||||||||||| ||||||| | | ||| ||||||||||| |
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| T |
31286474 |
tcataatctaagtataccatccaaagaaattgcgtcaccaagcaaatattttgatgatgcaagagaagtgattaaat |
31286398 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 198 - 249
Target Start/End: Original strand, 20008124 - 20008175
Alignment:
| Q |
198 |
ttttgaagagtaattgtttgcaatatgttcagtcactttttctgttgtagta |
249 |
Q |
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|||||||||||||||||||||||| |||| ||| | |||||||| ||||||| |
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| T |
20008124 |
ttttgaagagtaattgtttgcaatttgtttagtaagtttttctgatgtagta |
20008175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 230
Target Start/End: Complemental strand, 24973587 - 24973555
Alignment:
| Q |
198 |
ttttgaagagtaattgtttgcaatatgttcagt |
230 |
Q |
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|||||||||||||||||||||||| |||||||| |
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| T |
24973587 |
ttttgaagagtaattgtttgcaatttgttcagt |
24973555 |
T |
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