View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7620_low_3 (Length: 701)
Name: NF7620_low_3
Description: NF7620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7620_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 388; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 388; E-Value: 0
Query Start/End: Original strand, 209 - 685
Target Start/End: Complemental strand, 39923318 - 39922836
Alignment:
| Q |
209 |
atgtagatgtacttacaaatgttttgttcaagtagcaaagaatttggacctcttaaacggtgattaggggtttgattattgattttgcacatgnnnnnnn |
308 |
Q |
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| T |
39923318 |
atgtagatgtacttacaaatgttttgttcaagtagcaaagaatttggacctcttaaacggtgattaggggtttgattattgattttgcacatgaaaaaaa |
39923219 |
T |
|
| Q |
309 |
ttcgattgaaaatgtagaacccacattgtatgcttgacaagttcctcaacatatatat------------tgatcattgttaaaagcggttaaatcttcg |
396 |
Q |
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| T |
39923218 |
atcgattgaaaatgtagaacccacattgtatgcttgacaagttcctcaacatatatatatatatatatattgatcattgttaaaagcggttaaatcttcg |
39923119 |
T |
|
| Q |
397 |
tggcaataacataatgagaagaaaaaagattagtgtagatgtaaattgctatcaacaaatatgttgatgtaatattgcatataattacgcaaggttttct |
496 |
Q |
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| T |
39923118 |
tggcaataacatgatgagaagaaaaaagattagtgtagatgtaaattgctatcaacaaaaatgttgatgtaatattgcatataattacgcaaggttttct |
39923019 |
T |
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| Q |
497 |
accttatgtgcaaagaaataaactattggaccgtttgtttcctcggcaggaatgacgcagacgcacatgtactagaagttgagatttttaactttacaaa |
596 |
Q |
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| T |
39923018 |
accttatgtgcaaagaaataaactattggaccgtttgtttcctcggcaggaatgacgcagacgcacatgtactagaagttgagatttttaactttacaaa |
39922919 |
T |
|
| Q |
597 |
ttcacagcaaaatggcattctaaacatgaacatacgtataagtccgcaaaactaaatcaaacccatactatatcacatcaccaagaaag |
685 |
Q |
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| T |
39922918 |
ttcacagcaaaatggcattctaa------acatacgtataactccgcaaaactaaatcaaacccatactatatcacatcaccaagaaag |
39922836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 180; E-Value: 8e-97
Query Start/End: Original strand, 16 - 219
Target Start/End: Complemental strand, 39923555 - 39923352
Alignment:
| Q |
16 |
atgtactttttggtgttaaccctccggttcttgaaagaaaaggaccctaaaaatctggaattcgatcagaaagtaagtaaagtctaaccaaatattgttc |
115 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| |
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| T |
39923555 |
atgtactttttggtgttaaccctccagttcttgaaagaaaaggaccctaaaaatctgaaattcgattaaaaagtaagtaaagtctaaccaaatattgttc |
39923456 |
T |
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| Q |
116 |
taccaacaatatgtactactatatatttgtgaggagtaatcaagtagcaaagattacaaattcatttaaatatatgtaatattacacatattgatgtaga |
215 |
Q |
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|||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39923455 |
taccaacaatatgtactattatatatgtgtgaggagtaatcaagtagcaaagattacaaattcatttaaatatatgtaatattacacatattgatgtaga |
39923356 |
T |
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| Q |
216 |
tgta |
219 |
Q |
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|||| |
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| T |
39923355 |
tgta |
39923352 |
T |
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