View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7620_low_5 (Length: 454)
Name: NF7620_low_5
Description: NF7620
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7620_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 10 - 437
Target Start/End: Original strand, 49064671 - 49065098
Alignment:
| Q |
10 |
aagaatataatgcctcaaatacaatatatgtctgtctctatacgagcacataccacatgcctcatttaaattgttgatgttgatgatagaaacactcgac |
109 |
Q |
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| T |
49064671 |
aagactataatgcctcaaatacaatatatgtctgtctctatacgagcacataccacatgcctcatttaaattgttgatgttgatgatagaaacactcgac |
49064770 |
T |
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| Q |
110 |
tactacttgtttgtgttgtgggccatttttatcaatgcatgagtctttgtctatccagccacccacacggtcatactcatctacagaattttcaatctca |
209 |
Q |
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| T |
49064771 |
tactacttgtttgtgttgtgggccatttttatcaatgcatgagtctttgtctatccagccacccacacggtcatactcatctacagaattttcaatctca |
49064870 |
T |
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| Q |
210 |
atcaaaactatttgttactatatgaagcacaacaattccattaatttttctgacatttgaaaaaacataaatttaaccttatattaaaaagaatacatca |
309 |
Q |
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| T |
49064871 |
atcaaaactatttgttactatatgaagcacaacaattccattaatttttctgacatttgaaaaaacataaatttaaccttatattaaaaagaatacatca |
49064970 |
T |
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| Q |
310 |
cgtgtaaaactcctatatactttttaaaggtaagtgcagcagctattaccccnnnnnnnntctacaatggaaatgccattgcagaatccacatgaaactt |
409 |
Q |
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||||| |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
49064971 |
cgtgtcaaactcctatatactttttaaaggtaagtgtagcagctattaccccaaaaaaaatctacaatggaaatgccattgcagaatccacatgaaactt |
49065070 |
T |
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| Q |
410 |
ttgaggaagaagaaaaggaggcaaaggt |
437 |
Q |
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| T |
49065071 |
ttgaggaagaagaaaaggaggcaaaggt |
49065098 |
T |
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