View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7621_high_1 (Length: 554)
Name: NF7621_high_1
Description: NF7621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7621_high_1 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-138; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-138
Query Start/End: Original strand, 20 - 277
Target Start/End: Original strand, 4143850 - 4144107
Alignment:
| Q |
20 |
cttggtcgatctggcggagaagggaagagcatggcaccgtcaacgtagttcattacacactgtattgggcccgataataatgggcccatcttaatataag |
119 |
Q |
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| T |
4143850 |
cttggtcgatctggcggagaagggaagagcatggcaccgtcaacgtagttcattacacactgtattgggcccgataataatgggcccatcttaatataag |
4143949 |
T |
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| Q |
120 |
aggaaaagatgaggattgttatttgcacccctctaatttacttctaacgcacctgtataagaaggggaaaaaagctcatgggctttgagcccaagcccgc |
219 |
Q |
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| T |
4143950 |
aggaaaagatgaggattgttatttgcacccctctaatttacttctaacgcacctgtataagaaggggaaaaaagctcatgggctttgagcccaagcccac |
4144049 |
T |
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| Q |
220 |
ccgcaaaaaacatacctatttataggtatgttaagctttcctttcctttaactctcga |
277 |
Q |
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| T |
4144050 |
ccgcaaaaaacatacctatttataggtatgttaagttttcctttcctttaactctcga |
4144107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 6e-63
Query Start/End: Original strand, 318 - 447
Target Start/End: Original strand, 4144151 - 4144281
Alignment:
| Q |
318 |
cttcttcttctagttgttgtatgcgaattgcaaatttatactctgttaaataacaagtttcaatttaaattttgaaatattttaggggttaagtaagtgt |
417 |
Q |
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| T |
4144151 |
cttcttcttctagttgttgtatgcgaattgcaaatttatactctgttaaataacaagtttcaatttaaattttgaaatattttaggggttaagtaagtgt |
4144250 |
T |
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| Q |
418 |
ta-tttcttttttgaaggagggttaaataag |
447 |
Q |
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| T |
4144251 |
tattttcttttttgaaggagggttaaataag |
4144281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 513 - 541
Target Start/End: Original strand, 4144347 - 4144375
Alignment:
| Q |
513 |
gttgtccctaatagttggtttatgttcat |
541 |
Q |
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| T |
4144347 |
gttgtccctaatagttggtttatgttcat |
4144375 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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