View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7621_high_4 (Length: 289)

Name: NF7621_high_4
Description: NF7621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7621_high_4
NF7621_high_4
[»] chr1 (3 HSPs)
chr1 (18-271)||(14344296-14344540)
chr1 (182-269)||(44163549-44163636)
chr1 (180-243)||(9094353-9094416)
[»] chr5 (4 HSPs)
chr5 (180-271)||(32278496-32278587)
chr5 (128-271)||(1442695-1442833)
chr5 (185-268)||(37306993-37307075)
chr5 (185-268)||(36868512-36868594)
[»] chr3 (2 HSPs)
chr3 (180-271)||(49106823-49106914)
chr3 (189-241)||(29347069-29347122)
[»] chr2 (2 HSPs)
chr2 (127-228)||(37344852-37344948)
chr2 (182-267)||(30180038-30180123)
[»] chr6 (3 HSPs)
chr6 (127-271)||(3949578-3949717)
chr6 (180-271)||(2606656-2606747)
chr6 (182-271)||(25168086-25168175)
[»] chr4 (1 HSPs)
chr4 (182-271)||(37050244-37050333)
[»] chr7 (5 HSPs)
chr7 (180-267)||(34548127-34548214)
chr7 (180-271)||(16099804-16099895)
chr7 (183-268)||(29132238-29132323)
chr7 (189-240)||(7543902-7543954)
chr7 (189-217)||(19407690-19407718)
[»] chr8 (1 HSPs)
chr8 (197-271)||(3801207-3801281)


Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 14344540 - 14344296
Alignment:
Q  18 tttgaaagcaaatggaaaggaaagagtaggcatcttttgtaaatgctttttactcattgcacacgagcgataaagttacaaaggaattatgtgaactaan 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  14344540 tttgaaagcaaatggaaaggaaagagtaggcatcttttgtaaatgctttttactcattgcacacgagcgataaagttacaaaggaattatgtgaactaat 14344441  T
Q  118 nnnnnnnnatttatcaaagcaataaaatataaagaaggagaagtttgaaccaataaatcagaatcagagtcacatagtgtaaaacctatgaaaagagaaa 217  Q
             ||||||||||||||||||||||||| ||||||||  |||| |||||      |||| |||| |||| ||||||||  |||||||||| |||    
T  14344440 tttttt---tttatcaaagcaataaaatataaagtaggagaagcctgaatcaata------aatcggagttacattgtgtaaaatttatgaaaagaaaaa 14344350  T
Q  218 tcggatctatctcaaaaaagaaaatgtcataagaaacgaggtgtcaaagacaac 271  Q
    ||||||||||| ||||||||  ||||||||||| ||||||||||||||||||||    
T  14344349 tcggatctatcccaaaaaagggaatgtcataaggaacgaggtgtcaaagacaac 14344296  T

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Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 44163549 - 44163636
Alignment:
Q  182 cagagtcacatagtgtaaaacctatgaaaagagaaatcggatctatctcaaaaaagaaaatgtcataagaaacgaggtgtcaaagaca 269  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| ||| ||||  |||| | | || ||||| ||||||||||||    
T  44163549 cagagtcacatagtgtaaaacctatgaaaagagaaaccggatctatcccaagaaaggtaatgccctgaggaacgatgtgtcaaagaca 44163636  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 243
Target Start/End: Original strand, 9094353 - 9094416
Alignment:
Q  180 atcagagtcacatagtgtaaaacctatgaaaagagaaatcggatctatctcaaaaaagaaaatg 243  Q
    |||||||| ||||||||||||||||||||||||||||||  |||||||  ||| ||||||||||    
T  9094353 atcagagttacatagtgtaaaacctatgaaaagagaaataagatctattccaagaaagaaaatg 9094416  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 32278496 - 32278587
Alignment:
Q  180 atcagagtcacatagtgtaaaacctatgaaaagagaaatcggatctatctcaaaaaagaaaatgtcataagaaacgaggtgtcaaagacaac 271  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||| ||| |||   |||||| |||| ||||||||||||||||||||    
T  32278496 atcagagtcacatagtgtaaaacctatgaaaagagaaaccggatctatcccaagaaaaggaatgtcctaaggaacgaggtgtcaaagacaac 32278587  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 128 - 271
Target Start/End: Original strand, 1442695 - 1442833
Alignment:
Q  128 ttatcaaagcaataaaatataaa-gaaggagaagtttgaaccaataaatcagaatcagagtcacatagtgtaaaacctatgaaaagagaaatcggatcta 226  Q
    ||||||||||||||||||||||| | |||||| |  |||||||||| ||||      |||||||||| |||||||| || ||||||||||| | ||||||    
T  1442695 ttatcaaagcaataaaatataaaagcaggagaggcatgaaccaatacatca------gagtcacatattgtaaaacataagaaaagagaaaccagatcta 1442788  T
Q  227 tctcaaaaaagaaaatgtcataagaaacgaggtgtcaaagacaac 271  Q
    || ||| ||||  |||||| ||   ||| ||||||||||||||||    
T  1442789 tcccaagaaagggaatgtcctactgaacaaggtgtcaaagacaac 1442833  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 185 - 268
Target Start/End: Original strand, 37306993 - 37307075
Alignment:
Q  185 agtcacatagtgtaaaacctatgaaaagagaaatcggatctatctcaaaaaagaaaatgtcataagaaacgaggtgtcaaagac 268  Q
    ||||||| | ||||||| ||| ||||||| |||||||||||||| | || ||| |||||||||||| || ||||||||||||||    
T  37306993 agtcacaaaatgtaaaatctacgaaaagaaaaatcggatctatc-ccaagaaggaaatgtcataaggaaagaggtgtcaaagac 37307075  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 185 - 268
Target Start/End: Complemental strand, 36868594 - 36868512
Alignment:
Q  185 agtcacatagtgtaaaacctatgaaaagagaaatcggatctatctcaaaaaagaaaatgtcataagaaacgaggtgtcaaagac 268  Q
    |||||||  |||||| ||||||||||||| |||||||||||||| ||| |||| ||| | | |||||||  |||||||||||||    
T  36868594 agtcacaatgtgtaagacctatgaaaagaaaaatcggatctatcccaagaaaggaaaagacctaagaaa-aaggtgtcaaagac 36868512  T

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Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 49106823 - 49106914
Alignment:
Q  180 atcagagtcacatagtgtaaaacctatgaaaagagaaatcggatctatctcaaaaaagaaaatgtcataagaaacgaggtgtcaaagacaac 271  Q
    |||||| |||||||||| |||||||||||||||||||| |||||||||| ||| ||||  |||||| |||||||| ||||||||||||||||    
T  49106823 atcagattcacatagtgaaaaacctatgaaaagagaaaccggatctatcccaagaaagggaatgtcctaagaaacaaggtgtcaaagacaac 49106914  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 241
Target Start/End: Complemental strand, 29347122 - 29347069
Alignment:
Q  189 acatagtgtaaaacctatgaaaagagaaatcggatctatctcaa-aaaagaaaa 241  Q
    |||||| |||||||||||||||||||||| ||| |||||| ||| |||||||||    
T  29347122 acatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaaa 29347069  T

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Target: chr2 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 127 - 228
Target Start/End: Complemental strand, 37344948 - 37344852
Alignment:
Q  127 tttatcaaagcaataaaatataaa-gaaggagaagtttgaaccaataaatcagaatcagagtcacatagtgtaaaacctatgaaaagagaaatcggatct 225  Q
    |||||||||||||||||||||||| | |||||| ||||||||||||| ||||||      |||||||||||||||||||| |||||||||||||||||||    
T  37344948 tttatcaaagcaataaaatataaaagcaggagaggtttgaaccaatacatcaga------gtcacatagtgtaaaacctacgaaaagagaaatcggatct 37344855  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 267
Target Start/End: Complemental strand, 30180123 - 30180038
Alignment:
Q  182 cagagtcacatagtgtaaaacctatgaaaagagaaatcggatctatctcaaaaaagaaaatgtcataagaaacgaggtgtcaaaga 267  Q
    |||||||||| ||||||||| ||||||||||| |||| | |||| |   ||||||| ||| ||| |||| || |||||||||||||    
T  30180123 cagagtcacaaagtgtaaaatctatgaaaagaaaaattgaatctgtactaaaaaaggaaaggtcctaaggaaagaggtgtcaaaga 30180038  T

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Target: chr6 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 127 - 271
Target Start/End: Complemental strand, 3949717 - 3949578
Alignment:
Q  127 tttatcaaagcaataaaatataaa-gaaggagaagtttgaaccaataaatcagaatcagagtcacatagtgtaaaacctatgaaaagagaaatcggatct 225  Q
    |||||||||||||||||||||||| | | |||| || |||||||||| | ||||      | |||||||||||||||||||||||||||||| |||||||    
T  3949717 tttatcaaagcaataaaatataaaagcatgagaggtctgaaccaatacaacaga------gacacatagtgtaaaacctatgaaaagagaaaccggatct 3949624  T
Q  226 atctcaaaaaagaaaatgtcataagaaacgaggtgtcaaagacaac 271  Q
    |||  || ||||  |||| | |||| ||||||||||||||||||||    
T  3949623 atcctaagaaagggaatgacctaaggaacgaggtgtcaaagacaac 3949578  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 180 - 271
Target Start/End: Original strand, 2606656 - 2606747
Alignment:
Q  180 atcagagtcacatagtgtaaaacctatgaaaagagaaatcggatctatctcaaaaaagaaaatgtcataagaaacgaggtgtcaaagacaac 271  Q
    |||||||||||| |||| ||||||||||||||||||||  |||||||||  || ||||  ||| || |||| ||| ||||||||||||||||    
T  2606656 atcagagtcacaaagtgaaaaacctatgaaaagagaaactggatctatcctaagaaagggaatatcctaaggaacaaggtgtcaaagacaac 2606747  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 271
Target Start/End: Complemental strand, 25168175 - 25168086
Alignment:
Q  182 cagagtcacatagtgtaaaacctatgaaaagagaaatcggatctatctcaaaaaagaaaatgtcataagaaacgaggtgtcaaagacaac 271  Q
    ||||||||||||||||||||||||||||||||||||    ||||||| ||| ||||  |||||   ||| ||||||||||||||| ||||    
T  25168175 cagagtcacatagtgtaaaacctatgaaaagagaaactaaatctatcccaataaagggaatgttcaaaggaacgaggtgtcaaaggcaac 25168086  T

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Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 182 - 271
Target Start/End: Complemental strand, 37050333 - 37050244
Alignment:
Q  182 cagagtcacatagtgtaaaacctatgaaaagagaaatcggatctatctcaaaaaagaaaatgtcataagaaacgaggtgtcaaagacaac 271  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||| ||| ||||  ||||||  ||| |||||||| |||||||||||    
T  37050333 cagagtcacatagtgtaaaacctatgaaaagagaaactggatctatcccaataaagggaatgtccaaaggaacgaggtatcaaagacaac 37050244  T

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Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 180 - 267
Target Start/End: Complemental strand, 34548214 - 34548127
Alignment:
Q  180 atcagagtcacatagtgtaaaacctatgaaaagagaaatcggatctatctcaaaaaagaaaatgtcataagaaacgaggtgtcaaaga 267  Q
    ||||||||||| ||||| |||| |||||||||||||||||||||||||| ||| ||||  |||||| |||| ||| ||||||||||||    
T  34548214 atcagagtcacttagtgaaaaatctatgaaaagagaaatcggatctatcccaagaaagggaatgtcctaaggaacaaggtgtcaaaga 34548127  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 271
Target Start/End: Complemental strand, 16099895 - 16099804
Alignment:
Q  180 atcagagtcacatagtgtaaaacctatgaaaagagaaatcggatctatctcaaaaaagaaaatgtcataagaaacgaggtgtcaaagacaac 271  Q
    |||||||||| ||| ||||||||||||| ||||||||| |||||||||| | | ||||  || ||  |||| ||||||||| ||||||||||    
T  16099895 atcagagtcatataatgtaaaacctatggaaagagaaaccggatctatcccgagaaagggaaagttctaaggaacgaggtgacaaagacaac 16099804  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 268
Target Start/End: Original strand, 29132238 - 29132323
Alignment:
Q  183 agagtcacatagtgtaaaacctatgaaaagagaaatcggatctatctcaaaaaagaaaatgtcataagaaacgaggtgtcaaagac 268  Q
    ||||||||  |||||||||| |||||||||| ||| || ||||||| ||| |||| ||| ||  ||| ||| ||||||||||||||    
T  29132238 agagtcacgaagtgtaaaacttatgaaaagaaaaaccgaatctatcccaagaaaggaaaagttctaaaaaaagaggtgtcaaagac 29132323  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 240
Target Start/End: Original strand, 7543902 - 7543954
Alignment:
Q  189 acatagtgtaaaacctatgaaaagagaaatcggatctatctcaa-aaaagaaa 240  Q
    |||||| |||||||||||||||||||||| ||| |||||| ||| ||||||||    
T  7543902 acatagagtaaaacctatgaaaagagaaaccgggtctatcccaagaaaagaaa 7543954  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 189 - 217
Target Start/End: Original strand, 19407690 - 19407718
Alignment:
Q  189 acatagtgtaaaacctatgaaaagagaaa 217  Q
    |||||||||||||||||||||||||||||    
T  19407690 acatagtgtaaaacctatgaaaagagaaa 19407718  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 3801281 - 3801207
Alignment:
Q  197 taaaacctatgaaaagagaaatcggatctatctcaaaaaagaaaatgtcataagaaacgaggtgtcaaagacaac 271  Q
    ||||||||||||||||||||| ||||||||||  || ||||  || | | |||| || |||||||||||||||||    
T  3801281 taaaacctatgaaaagagaaaccggatctatcctaagaaaggcaaggacctaaggaaagaggtgtcaaagacaac 3801207  T

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