View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7621_low_2 (Length: 481)
Name: NF7621_low_2
Description: NF7621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7621_low_2 |
 | |
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| [»] scaffold0522 (3 HSPs) |
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| [»] scaffold0309 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 1 - 472
Target Start/End: Complemental strand, 21471833 - 21471360
Alignment:
| Q |
1 |
taggggtatgaggtgtaacagtggtaggaggcgtaacaggggaaggaggcgtaacaggtgtaggaggcgttacaggggcaggaggggtaacaggggtagg |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
21471833 |
taggggtaggaggtgtaacagtggtaggaggcgtaataggggaaggaggcgtaataggtgtaggaggcgttacaggggcaggaggggtaacaggggtagg |
21471734 |
T |
|
| Q |
101 |
aggagaaattggggcaggaggtgtaagagggacagaaggcttaactggtgttggaggcgtaacagggacaggaggcttaacaatgacaggagggtttata |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | |
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|
| T |
21471733 |
aggagaaattggggcagggggtgtaagagggacagaaggcttaactggtgttggaggcgtaacagggacaggaggcttaacaatgactggagggtttaca |
21471634 |
T |
|
| Q |
201 |
ggagcaggcttaacagggacaataggtttaacaggggcaggcttaaatttaaaaccatcaggttcgtaaagagctgtttcaaactcttcagcaaatgaag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
21471633 |
ggagcaggcttaacagggacaataggtttaacaggggcaggcttaaatttaaaaccatcaagttcgtaaagagctgtttcaaactcttcagcaaatgaag |
21471534 |
T |
|
| Q |
301 |
tgaaaaatgctagttgaagtaagagtaacaacagtgcaaaaaatttgacca--nnnnnnnnngtgtgtaagagaaagtagtacttaagagaggggggaga |
398 |
Q |
| |
|
||||||||| |||||| ||||| |||| |||||||||||||| |||||||| |||||||||||||||||||||| |||| || ||| ||| |
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|
| T |
21471533 |
tgaaaaatggtagttggagtaaaagtagcaacagtgcaaaaattttgaccatttttttttttgtgtgtaagagaaagtagtactaaagaaagagggaaga |
21471434 |
T |
|
| Q |
399 |
agtaatgttggtgttatgaaatgatgtgagaatgtgactttgaggttgatttatttataggagctgatgtccat |
472 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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|
| T |
21471433 |
agtaatgttggtgttatggaatgatgtgagaatgtgactttgaggttgatttatttataggagctaatgcccat |
21471360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 21471859 - 21471785
Alignment:
| Q |
29 |
aggcgtaacaggggaaggaggcgtaacaggtgtaggaggcgttacaggggcaggaggggtaacaggggtaggagg |
103 |
Q |
| |
|
|||||||||||||||||||||| ||| ||| |||||||| || |||| || |||||| |||| ||||| |||||| |
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|
| T |
21471859 |
aggcgtaacaggggaaggaggcataataggggtaggaggtgtaacagtggtaggaggcgtaataggggaaggagg |
21471785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Complemental strand, 21471855 - 21471767
Alignment:
| Q |
15 |
gtaacagtggtaggaggcgtaacaggggaaggaggcgtaacaggtgtaggaggcgttacaggggcaggaggggtaacaggggtaggagg |
103 |
Q |
| |
|
||||||| || ||||||| ||| ||||| |||||| ||||||| ||||||||||| | ||||| |||||| |||| ||| |||||||| |
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|
| T |
21471855 |
gtaacaggggaaggaggcataataggggtaggaggtgtaacagtggtaggaggcgtaataggggaaggaggcgtaataggtgtaggagg |
21471767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522 (Bit Score: 346; Significance: 0; HSPs: 3)
Name: scaffold0522
Description:
Target: scaffold0522; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 5 - 472
Target Start/End: Original strand, 864 - 1336
Alignment:
| Q |
5 |
ggtatgaggtgtaacagtggtaggaggcgtaacaggggaaggaggcgtaacaggtgtaggaggcgttacaggggcaggaggggtaacaggggtaggagga |
104 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
864 |
ggtaggaggtgtaacagtggtaggaggcgtaataagggaaggaggcgtaacaggtgtaggaggcgttacaggggcaggaggggtaacaggggtaggagga |
963 |
T |
|
| Q |
105 |
gaaattggggcaggaggtgtaagagggacagaaggcttaactggtgttggaggcgtaacagggacaggaggcttaacaatgacaggagggtttataggag |
204 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| |
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|
| T |
964 |
gaaattggggcagggggtgtaagtgggacagaaggcttaactggtgttggaggcgtaacagggacaggaggcttaacaatgactggagggtttacaggag |
1063 |
T |
|
| Q |
205 |
caggcttaacagggacaataggtttaacaggggcaggcttaaatttaaaaccatcaggttcgtaaagagctgtttcaaactcttcagcaaatgaagtgaa |
304 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
1064 |
caggcttaacagggacaataggtttaacaggggcgggcttaaatttaaaaccatcaagttcgtaaagagctgtgtcaaactcttcagcaaatgaagtgaa |
1163 |
T |
|
| Q |
305 |
aaatgctagttgaagtaagagtaacaacagtgcaaaaaatttgacca-----nnnnnnnnngtgtgtaagagaaagtagtacttaagagaggggggagaa |
399 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||| ||| |||||||| |||||||||||||||||||||| ||||||| ||| |||| |
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|
| T |
1164 |
aaatgctagttggagtaagagtagcaacagtgcataaattttgaccattttttttttttttgtgtgtaagagaaagtagtactaaagagagagggaagaa |
1263 |
T |
|
| Q |
400 |
gtaatgttggtgttatgaaatgatgtgagaatgtgactttgaggttgatttatttataggagctgatgtccat |
472 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
1264 |
gtaatgttggtgttatggaatgatgtgagaatgtgactttgaggttgatttatttataggagctaatgcccat |
1336 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 838 - 926
Alignment:
| Q |
15 |
gtaacagtggtaggaggcgtaacaggggaaggaggcgtaacaggtgtaggaggcgttacaggggcaggaggggtaacaggggtaggagg |
103 |
Q |
| |
|
||||||| || ||||||||||| || || |||||| ||||||| ||||||||||| | | ||| |||||| |||||||| |||||||| |
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|
| T |
838 |
gtaacaggggaaggaggcgtaatagcggtaggaggtgtaacagtggtaggaggcgtaataagggaaggaggcgtaacaggtgtaggagg |
926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0522; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 834 - 908
Alignment:
| Q |
29 |
aggcgtaacaggggaaggaggcgtaacaggtgtaggaggcgttacaggggcaggaggggtaacaggggtaggagg |
103 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||| || |||| || |||||| |||| | ||| |||||| |
|
|
| T |
834 |
aggcgtaacaggggaaggaggcgtaatagcggtaggaggtgtaacagtggtaggaggcgtaataagggaaggagg |
908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: scaffold0309
Description:
Target: scaffold0309; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 10 - 472
Target Start/End: Complemental strand, 4158 - 3691
Alignment:
| Q |
10 |
gaggtgtaacagtggtaggaggcgtaacaggggaaggaggcgtaacaggtgtaggaggcgttacaggggcaggaggggtaacaggggtaggaggagaaat |
109 |
Q |
| |
|
|||| |||| || ||||||||| ||||||| || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4158 |
gaggcgtaataggggtaggaggtgtaacagtggtaggaggcgtaacaggtgtaggaggcgttacaggggtaggaggggtaacaggggtaggaggagaaat |
4059 |
T |
|
| Q |
110 |
tggggcaggaggtgtaagagggacagaaggcttaactggtgttggaggcgtaacagggacaggaggcttaacaatgacaggagggtttataggagcaggc |
209 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||| |||||||||| |||||||||| |
|
|
| T |
4058 |
tggggcagggggtgtaagagggacaaaaggcttaactagtgttggaggcataacagggacaggaggcctaacaatgactggagggtttacaggagcaggc |
3959 |
T |
|
| Q |
210 |
ttaacagggacaataggtttaacaggggcaggcttaaatttaaaaccatcaggttcgtaaagagctgtttcaaactcttcagcaaatgaagtgaaaaatg |
309 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
3958 |
ttaacaggaacaataggtttaaccggggcaggcttaaatttaaaaccatcaagttcgtaaagagctgtatcaaactcttcagtaaatgaagtgaaaaatg |
3859 |
T |
|
| Q |
310 |
ctagttgaagtaagagtaacaacagtgcaaaaaatttgacca-----nnnnnnnnngtgtgtaagagaaagtagtacttaagagaggggggagaagtaat |
404 |
Q |
| |
|
||||||| |||| ||||| |||||||||||||| |||||||| |||||||||||||||||||||| |||| || ||| ||||||||| |
|
|
| T |
3858 |
ctagttggagtaggagtagcaacagtgcaaaaattttgaccattttttttttgtgtgtgtgtaagagaaagtagtactaaagaaagagggaagaagtaat |
3759 |
T |
|
| Q |
405 |
gttggtgttatgaaatgatgtgagaatgtgactttgaggttgatttatttataggagctgatgtccat |
472 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
3758 |
gttggtgttatggaatgatgtgagaatgtgactttgaggttgatttatttataggagctaatgcccat |
3691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0309; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 29 - 103
Target Start/End: Complemental strand, 4175 - 4101
Alignment:
| Q |
29 |
aggcgtaacaggggaaggaggcgtaacaggtgtaggaggcgttacaggggcaggaggggtaacaggggtaggagg |
103 |
Q |
| |
|
|||||||||||| ||||||||||||| ||| |||||||| || |||| || |||||| |||||||| |||||||| |
|
|
| T |
4175 |
aggcgtaacaggagaaggaggcgtaataggggtaggaggtgtaacagtggtaggaggcgtaacaggtgtaggagg |
4101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 139; Significance: 2e-72; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 47 - 351
Target Start/End: Original strand, 19262542 - 19262858
Alignment:
| Q |
47 |
aggcgtaacaggtgtaggaggcgttacaggggcaggaggggtaacaggggtaggaggagaaattggggcaggaggtgtaagagggacagaaggcttaact |
146 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||| |
|
|
| T |
19262542 |
aggcgtaacaggggtaggaggcgtaacaggggaaggaggggtaacaggggtaggaggagaaattggggcaggaggcgtaagaggaagagaaggcttaatg |
19262641 |
T |
|
| Q |
147 |
ggtgttggaggcgtaacagggacaggaggcttaacaatgacaggagggtttataggagcaggcttaacagggacaataggtttaacaggggcaggctta- |
245 |
Q |
| |
|
|| || |||||||||||||||||||||||||||||||||||||||| || | ||| | |||||||||||||||||||| || | ||||||||||||| |
|
|
| T |
19262642 |
ggggtaggaggcgtaacagggacaggaggcttaacaatgacaggagacttaacagggtctggcttaacagggacaataggctttataggggcaggcttag |
19262741 |
T |
|
| Q |
246 |
---------aa--tttaaaaccatcaggttcgtaaagagctgtttcaaactcttcagcaaatgaagtgaaaaatgctagttgaagtaagagtaacaacag |
334 |
Q |
| |
|
|| |||||||||| ||||| ||||||||| ||||||| |||||| ||||||| ||||||||| | ||||||||||||||||||||||| |
|
|
| T |
19262742 |
tggggatagaaggcttaaaaccataaggtttgtaaagagcggtttcaagctcttccgcaaatgtagtgaaaaaggttagttgaagtaagagtaacaacaa |
19262841 |
T |
|
| Q |
335 |
tgcaaaaaatttgacca |
351 |
Q |
| |
|
||| || | |||||||| |
|
|
| T |
19262842 |
tgctaagattttgacca |
19262858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 15 - 145
Target Start/End: Original strand, 19262546 - 19262676
Alignment:
| Q |
15 |
gtaacagtggtaggaggcgtaacaggggaaggaggcgtaacaggtgtaggaggcgttacaggggcaggaggggtaacaggggtaggaggagaaattgggg |
114 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||| |||||||| | | ||||||||||| |||| ||| || ||| ||| |||| |
|
|
| T |
19262546 |
gtaacaggggtaggaggcgtaacaggggaaggaggggtaacaggggtaggaggagaaattggggcaggaggcgtaagaggaagagaaggcttaatggggg |
19262645 |
T |
|
| Q |
115 |
caggaggtgtaagagggacagaaggcttaac |
145 |
Q |
| |
|
|||||| |||| |||||||| ||||||||| |
|
|
| T |
19262646 |
taggaggcgtaacagggacaggaggcttaac |
19262676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 180
Target Start/End: Complemental strand, 11312975 - 11312818
Alignment:
| Q |
23 |
ggtaggaggcgtaacaggggaaggaggcgtaacaggtgtaggaggcgttacaggggcaggaggggtaacaggggtaggaggagaaattggggcaggaggt |
122 |
Q |
| |
|
||||||||| ||| ||||| ||||||| ||| ||| |||||||| || |||||| |||||||||||||||| | |||| ||| |||| |||||| |
|
|
| T |
11312975 |
ggtaggaggggtacgaggggcaggaggcttaataggcgtaggaggggtaacagggataggaggggtaacagggacacgaggcttaataggggtaggaggg |
11312876 |
T |
|
| Q |
123 |
gtaagagggacagaaggcttaactggtgttggaggcgtaacagggacaggaggcttaa |
180 |
Q |
| |
|
||| ||||| ||| |||||||| || || ||||| |||||||||| ||||||||||| |
|
|
| T |
11312875 |
gtacgaggggcaggaggcttaataggcgtaggaggggtaacagggataggaggcttaa |
11312818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 343
Target Start/End: Complemental strand, 11312764 - 11312670
Alignment:
| Q |
249 |
ttaaaaccatcaggttcgtaaagagctgtttcaaactcttcagcaaatgaagtgaaaaatgctagttgaagtaagagtaacaacagtgcaaaaaa |
343 |
Q |
| |
|
|||||| ||||| |||| | ||||| ||||||||||||||||||||||| ||||||||| | |||||| |||| ||| | ||||| ||| ||||| |
|
|
| T |
11312764 |
ttaaaagcatcaagttcttgaagagttgtttcaaactcttcagcaaatggagtgaaaaaggttagttggagtatgagcatcaacaatgctaaaaa |
11312670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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