View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7621_low_7 (Length: 280)
Name: NF7621_low_7
Description: NF7621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7621_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 151; Significance: 6e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 14 - 176
Target Start/End: Complemental strand, 7695702 - 7695540
Alignment:
| Q |
14 |
gaacttcgaaattgaaagaaatgataaatatttgcagacaattttttatgaagaagtgcttccacatcaaacaataattaataggttatcttgatcaaat |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
7695702 |
gaacttcgaaattgaaagaaatgataaatatttgcagacaattttttatgaagaagtgcttccatttcaaacaataattaataggttatcttggtcaaat |
7695603 |
T |
|
| Q |
114 |
agaggcaaatgttattatgagagaagaaaaatagaatgaacaatgtaattctcatttattgta |
176 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7695602 |
agaggcaaatgttattatgagagaagaaaaatagaatgaacaatgtaattctcatttattgta |
7695540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 4820912 - 4820990
Alignment:
| Q |
48 |
cagacaattttttatgaag---aagtgcttccacatcaaacaataattaataggttatcttgatc--aaatagaggcaaatgt |
125 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||| || |||||||||||||||| |
|
|
| T |
4820912 |
cagacaattttttatgaagaagaagtgcttccacttcaaacaa----taataggttatcttggtcaaaaatagaggcaaatgt |
4820990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 125
Target Start/End: Original strand, 34371920 - 34371998
Alignment:
| Q |
48 |
cagacaattttttatgaagaag---tgcttccacatcaaacaataattaataggttatcttgatcaaa--tagaggcaaatgt |
125 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||| ||||||||||| | ||| ||||||||||||| |
|
|
| T |
34371920 |
cagacaattttttatgaagaagaagtgcttccacttcaaacaataat----aggttatcttggtaaaaaatagaggcaaatgt |
34371998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 48 - 91
Target Start/End: Complemental strand, 16426926 - 16426880
Alignment:
| Q |
48 |
cagacaattttttatgaagaag---tgcttccacatcaaacaataat |
91 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
16426926 |
cagacaattttttatgaagaagaagtgcttccacttcaaacaataat |
16426880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University