View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7621_low_9 (Length: 266)
Name: NF7621_low_9
Description: NF7621
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7621_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 16 - 255
Target Start/End: Original strand, 25524908 - 25525147
Alignment:
| Q |
16 |
aaattatgagtaatcagtcaacgcatcaccaaccaatttcactgaggaatgttacctgttccatctatcatattnnnnnnnnncggctcctagagttgca |
115 |
Q |
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| T |
25524908 |
aaattattagtaatcagtcaacgcatcatcaaccaatttcactgaggaatgttacctgttccatctatcatattaaaaaaaaacggctcctagagttgca |
25525007 |
T |
|
| Q |
116 |
tttgttgcgagcactcaaatcctcaaagccaaaggactactagcttcgttggagatttaacttagtttcctttagctctttggcaacacactcagtcata |
215 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25525008 |
tttgttgcgagcactcaaatcgtcaaagccaaaggactactagcttcgttggagatttaacttagtttcctttagctctttggcaacacactcagtcata |
25525107 |
T |
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| Q |
216 |
tgaagaaaagggacaggacatcccttgaatatgtgttcat |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
25525108 |
tgaagaaaagggacaggacatcccttgaatatgtgttcat |
25525147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 20 - 241
Target Start/End: Complemental strand, 25517186 - 25516961
Alignment:
| Q |
20 |
tatgagtaatcagtcaacgcatcaccaaccaatttcactgaggaatgttacctgttccatctatcatattnnnnnnnnn-----cggctcctagagttgc |
114 |
Q |
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| T |
25517186 |
tatgagtaatcagctaacgtatcagcagccaatttcactgaggaacgttacctattccatctatcatatttaccattaaaaaaacagctcctagagttgc |
25517087 |
T |
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| Q |
115 |
atttgttgcgagcactcaaatcctcaaagccaaaggactactagcttcgttggagatttaacttagtttcctttagctctttggcaacacactcagtcat |
214 |
Q |
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| T |
25517086 |
atttgttgcgagcactcgaatcctcaaagccaaaggacttctagtttcatgggtcctt-aacttagtttcctttagctctttggcaacacactcagccat |
25516988 |
T |
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| Q |
215 |
atgaagaaaagggacaggacatccctt |
241 |
Q |
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| T |
25516987 |
aagaagaaaagggacagaacatccctt |
25516961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 25540447 - 25540590
Alignment:
| Q |
20 |
tatgagtaatcagtcaacgcatcaccaaccaatttcactgaggaatgttacctgttccatctatcatattnnnnnnnnn------cggctcctagagttg |
113 |
Q |
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||||||||||||| ||||||||| ||||||||||||||||||| ||||| |||||||||||||| ||| | ||||||||||||| |
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| T |
25540447 |
tatgagtaatcagctaacgcatcagtaaccaatttcactgaggaacgttacttgttccatctatcaaatttaccattatatagaacagctcctagagttg |
25540546 |
T |
|
| Q |
114 |
catttgttgcgagcactcaaatcctcaaagccaaaggactacta |
157 |
Q |
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| T |
25540547 |
catttgttgcgagcactcgaatcctcaaagctaaaggactacta |
25540590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 171 - 255
Target Start/End: Original strand, 25537587 - 25537671
Alignment:
| Q |
171 |
tttaacttagtttcctttagctctttggcaacacactcagtcatatgaagaaaagggacaggacatcccttgaatatgtgttcat |
255 |
Q |
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| T |
25537587 |
tttaacttaatttcatttatctctttggcaacacactcattcatatgaaggaaagggacagaacatcccttgaatacttgttcat |
25537671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 105 - 231
Target Start/End: Original strand, 44461030 - 44461149
Alignment:
| Q |
105 |
ctagagttgcatttgttgcgagcactcaaatcctcaaagccaaaggactactagcttcgttggagatttaacttagtttcctttagctctttggcaacac |
204 |
Q |
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||||||||||||||||||| ||||||| ||||||||||| |||||| |||||| | | |||||||||| |||||| ||||| || ||||||| |
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| T |
44461030 |
ctagagttgcatttgttgcaagcactccaatcctcaaag------gactaccagcttcaagtg-gctttaacttagcttccttaagctcctttgcaacac |
44461122 |
T |
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| Q |
205 |
actcagtcatatgaagaaaagggacag |
231 |
Q |
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|||||| ||||||||||||||| |||| |
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| T |
44461123 |
actcagccatatgaagaaaaggaacag |
44461149 |
T |
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