View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7622_high_4 (Length: 421)
Name: NF7622_high_4
Description: NF7622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7622_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 21 - 410
Target Start/End: Complemental strand, 28471877 - 28471488
Alignment:
| Q |
21 |
gaacgtattctgaaacctaatggaattggtgctttgcttttggattttgatgacaacgacaacattaacatgataagatatgcttcaccgatttcagcgt |
120 |
Q |
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| T |
28471877 |
gaacgtattctgaaacctaatggaattggtgctttgcttttggatttcgatgacaacgacaacattaacatgataagatatgcttcaccgatttcagcgt |
28471778 |
T |
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| Q |
121 |
tgctgcgaaattcatctattgttcatgttagtcttgtcaataatcatggcctcgttgttttcaagaaaaaatcagaatcaaaatctgaaactgaaagtga |
220 |
Q |
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| T |
28471777 |
tgctgcgaaattcatctattgttcatgttagtcttgtcaataatcatggcctcgttgttttcaagaaaaaatcagaatcaaaatctgaaactgaaagtga |
28471678 |
T |
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| Q |
221 |
aaacagaagctctttgttctatcatcaagttcttccagaagattgtaaaagtgttaactttgctaagcaattcatgaatctaatagagccgccgctagcg |
320 |
Q |
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| T |
28471677 |
aaacagaagctctttgttctatcatcaagttcttccagaagattgtaaaagtgttaactttgctaagcaattcatgaatctaatagagccgccgctagcg |
28471578 |
T |
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| Q |
321 |
aaggaaacaccataccaggaaaaaaccacttatttgcctaagtttaaggatgtttcttcaagtaagaagaatttagtttatgttaatatt |
410 |
Q |
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| T |
28471577 |
aaggaaacaccataccaggaaaaaaccacttatttgcctaagtttaaggatgtttcttcaagtaagaagaatttagtttatgttaatatt |
28471488 |
T |
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