View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7622_high_8 (Length: 312)
Name: NF7622_high_8
Description: NF7622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7622_high_8 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 13 - 124
Target Start/End: Complemental strand, 53940295 - 53940184
Alignment:
| Q |
13 |
gagaagaatgaatgtgagaatttggctttagatactctcgtcaacttgtttaaagataattaacaaaagattagtgatattttaacaaccaattgagaca |
112 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
53940295 |
gagaagaatgaatgtgagaatttggctttagatactctcgtcaacttgtttaaagataatttacaaaagattagtgatattttaacaactaattgagaca |
53940196 |
T |
|
| Q |
113 |
accttgatgaca |
124 |
Q |
| |
|
|||||||||||| |
|
|
| T |
53940195 |
accttgatgaca |
53940184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 200 - 294
Target Start/End: Complemental strand, 53940108 - 53940014
Alignment:
| Q |
200 |
ttatcataaagtggttgtataaatataattttttccctttacaaaattataattttagttaccatggttgtattggggtattagagctcacttgg |
294 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53940108 |
ttatcataaagtggttgtataaatataattttttctctttacaaaattataattttagttaccatggttgtattggggtattagagctcacttgg |
53940014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 39241184 - 39241224
Alignment:
| Q |
74 |
aacaaaagattagtgatattttaacaaccaattgagacaac |
114 |
Q |
| |
|
||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
39241184 |
aacaaaagagtagtgatattttaacaaccatttgagacaac |
39241224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 233
Target Start/End: Original strand, 32510871 - 32510904
Alignment:
| Q |
200 |
ttatcataaagtggttgtataaatataatttttt |
233 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| |
|
|
| T |
32510871 |
ttatcataaattggttgtataaatataatttttt |
32510904 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University