View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7622_low_12 (Length: 254)
Name: NF7622_low_12
Description: NF7622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7622_low_12 |
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Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 35800356 - 35800132
Alignment:
| Q |
1 |
ccagttaaatggtcaaacaatcatacagttgacagggttccagctcccatttatcagatgcatgagattacaactaaaaatatataaaaggctaaccaga |
100 |
Q |
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| T |
35800356 |
ccagttaaatggtcaaacaatcatacagttgacagggttccagc-------------atgcatgagattacaactaaaaatatataaaaggctaaccaga |
35800270 |
T |
|
| Q |
101 |
gatcctagttcttttaaatttgattgaattttaaaattcaataattgattaaagccaatgataacaaaaaacatgctggaaa--gagcatttctaaacca |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
35800269 |
gatcctagttcttttaaatttgattgaattttaaaattcaataattgattaaagccaatgataacaaaaaacatgctggaaactgagcatttctaaacca |
35800170 |
T |
|
| Q |
199 |
aaaagatggtaagtgaaatttcacctaaaatatatgat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
35800169 |
aaaagatggtaagtgaaatttcacctaaaatatatgat |
35800132 |
T |
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