View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7622_low_2 (Length: 475)
Name: NF7622_low_2
Description: NF7622
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7622_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 143 - 340
Target Start/End: Complemental strand, 53940962 - 53940765
Alignment:
| Q |
143 |
aaaaaagaagggaaggatcctcaaaccgaatacccaaatgagagtgaagctacaccnnnnnnnngtccaagtgcaatctttgaaaacatgatccaaatct |
242 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
53940962 |
aaaaaagaagggaaggatcctcaaaccgaatacccaaatgagagggacgctacaccttttttttgtccaagtgcaatctttgaaaacatgatccaaatct |
53940863 |
T |
|
| Q |
243 |
tcataagcattcccacaacatgaacaaaaataatcaatcatcctttcgagttagagcaaacctttcgagttaatttaattcttaccgagacatcatta |
340 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53940862 |
tcataagcattcccacaacatgaacaaaaataatcaatcatcctttcgagttagagcaaacctttcgagttaatttaattcttaccgagacatcatta |
53940765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 349 - 475
Target Start/End: Complemental strand, 53940398 - 53940272
Alignment:
| Q |
349 |
cattatatattcaatgatttgtatgattttccattaactattgacaaacacaaggcttggaattaattcatcatcatgggagattttaatttgatgctca |
448 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
53940398 |
cattatatattcaatgatttgtatggttttccattaactattgacaaacacaaggcttggaattaattcatcatcttgggagattttaatttgatgctca |
53940299 |
T |
|
| Q |
449 |
acagagaagaatgaatgtgagaatttg |
475 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
53940298 |
acagagaagaatgaatgtgagaatttg |
53940272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 8 - 127
Target Start/End: Complemental strand, 53941257 - 53941138
Alignment:
| Q |
8 |
cgaagaatatcctttgcaggcatttccatcaaaacaagacttgccatgagcaaactaaatgtcataccataaagaaagaacatacgagatgatatctaag |
107 |
Q |
| |
|
|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
53941257 |
cgaacaatatccttcgcaggcatttccatcaaaacaagacttgccatgagcaaactaaatgtcatagcataaagaaagaacatacgagatgatatctaag |
53941158 |
T |
|
| Q |
108 |
gatgattaagatatgacatg |
127 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
53941157 |
gatgattaagatatgacatg |
53941138 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 24200031 - 24200145
Alignment:
| Q |
75 |
cataaagaaagaacatacgagatgatatctaaggatgattaagatatgacatgttcaagccaaggtataaaaaagaagggaaggatcctcaaaccgaata |
174 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| ||||| ||| |||||||||| |||| ||| ||| ||| ||||||||||||||||||| |||| |
|
|
| T |
24200031 |
cataaagaaagaacatatgagatgacatctaatgatgaacgagaaatgacatgtttaagctaagatat-gaaaggaagggaaggatcctcaaatcgaacc |
24200129 |
T |
|
| Q |
175 |
cccaaatgagagtgaa |
190 |
Q |
| |
|
|||||| |||||||| |
|
|
| T |
24200130 |
cccaaagaagagtgaa |
24200145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 187
Target Start/End: Complemental strand, 5554361 - 5554230
Alignment:
| Q |
55 |
gagcaaactaaatgtcataccataaagaaagaacatacgagatgatatctaaggatgattaagatatgacatgttcaagccaaggtataaaaaagaaggg |
154 |
Q |
| |
|
|||||||| |||| |||| ||||||||||||||||| |||| || |||||| ||||| | | | || |||||||||||||||| ||| ||| || |||| |
|
|
| T |
5554361 |
gagcaaaccaaataccataacataaagaaagaacatatgagacgacatctaatgatgaatgacaaataacatgttcaagccaagatatgaaagag-aggg |
5554263 |
T |
|
| Q |
155 |
aaggatcctcaaaccgaatacccaaatgagagt |
187 |
Q |
| |
|
||| |||||| || |||| ||| ||| |||||| |
|
|
| T |
5554262 |
aagaatcctctaatcgaacacctaaaggagagt |
5554230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 138
Target Start/End: Complemental strand, 21112828 - 21112728
Alignment:
| Q |
38 |
aaaacaagacttgccatgagcaaactaaatgtcataccataaagaaagaacatacgagatgatatctaaggatgattaagatatgacatgttcaagccaa |
137 |
Q |
| |
|
|||||||||||| |||||||||| |||| |||| ||||||||||||| ||| ||||||||||||| ||||| | ||| ||||| | |||||| ||| |
|
|
| T |
21112828 |
aaaacaagacttattatgagcaaaccaaataccataacataaagaaagaatatatcagatgatatctaatgatgaatgagaaatgacctattcaagtcaa |
21112729 |
T |
|
| Q |
138 |
g |
138 |
Q |
| |
|
| |
|
|
| T |
21112728 |
g |
21112728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University